Wall clock time and date at job start Mon Mar 30 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48498 * 109.47076 * 239.99845 * 3 2 1 5 5 H 1.48502 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47149 * 119.99646 * 3 2 1 7 7 C 1.37880 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99234 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47137 * 179.97438 * 9 7 2 11 11 N 1.31701 * 118.75728 * 89.99863 * 10 9 7 12 12 C 1.32761 * 120.69155 * 179.97438 * 11 10 9 13 13 O 1.34641 * 134.85393 * 179.97438 * 12 11 10 14 14 C 1.34396 * 108.23553 * 180.02562 * 13 12 11 15 15 N 1.29954 * 110.20135 * 359.97438 * 14 13 12 16 16 C 1.35706 * 108.69453 * 0.02562 * 15 14 13 17 17 C 1.40392 * 134.95799 * 180.02562 * 16 15 14 18 18 N 1.38380 * 120.79027 * 0.02562 * 17 16 15 19 19 N 1.32000 * 118.76232 * 269.98209 * 10 9 7 20 20 H 0.96999 * 119.99361 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46864 * 60.00141 * 9 7 2 22 22 H 1.08994 * 109.47454 * 299.99789 * 9 7 2 23 23 H 1.08002 * 124.89894 * 179.97438 * 14 13 12 24 24 H 0.97002 * 120.00233 * 179.97438 * 18 17 16 25 25 H 0.96999 * 120.00126 * 359.97402 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.6419 -4.1262 1.1551 12 6 3.5037 -5.1351 1.1999 13 8 4.0997 -5.8318 2.1859 14 6 4.8930 -6.7603 1.6247 15 7 4.8262 -6.6837 0.3291 16 6 3.9715 -5.6837 -0.0041 17 6 3.5042 -5.1389 -1.2107 18 7 3.9310 -5.6417 -2.4272 19 7 2.6426 -4.1277 -1.1566 20 1 -0.4849 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 5.4986 -7.4679 2.1715 24 1 3.6004 -5.2569 -3.2540 25 1 4.5607 -6.3791 -2.4532 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939887.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:59 Heat of formation + Delta-G solvation = 36.535026 kcal Electronic energy + Delta-G solvation = -14096.246610 eV Core-core repulsion = 11496.541340 eV Total energy + Delta-G solvation = -2599.705269 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.49872 -41.15569 -37.19677 -35.51081 -35.27238 -33.40243 -31.87090 -29.45371 -26.17682 -25.56193 -23.46520 -22.99699 -20.17867 -19.81090 -18.66338 -18.10826 -18.04784 -17.21103 -16.56225 -15.99744 -15.48499 -15.15264 -14.60846 -14.26992 -13.51656 -13.40987 -12.94268 -12.60083 -12.57064 -12.15533 -12.07909 -11.66663 -11.59795 -10.68460 -10.60391 -10.31542 -9.20258 -8.22350 -6.33862 -0.40550 0.07922 1.03514 1.36870 1.43116 1.45924 1.54166 2.13970 2.39997 2.69712 2.79149 2.97991 3.11419 3.44789 3.79770 4.10288 4.42447 4.97819 5.14988 5.28698 5.32030 5.65533 5.69222 5.94530 6.04188 6.36514 6.63584 6.69857 7.23744 7.32085 8.88870 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.040402 B = 0.007592 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.867578 B = 3687.421441 C = 3940.943972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.045 0.955 9 C 0.093 3.907 10 C 0.421 3.579 11 N -0.568 5.568 12 C 0.261 3.739 13 O -0.211 6.211 14 C 0.233 3.767 15 N -0.468 5.468 16 C -0.164 4.164 17 C 0.498 3.502 18 N -0.793 5.793 19 N -0.587 5.587 20 H 0.270 0.730 21 H 0.040 0.960 22 H 0.031 0.969 23 H 0.326 0.674 24 H 0.421 0.579 25 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.451 -13.573 -0.984 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.064 0.936 9 C 0.054 3.946 10 C 0.155 3.845 11 N -0.298 5.298 12 C 0.076 3.924 13 O -0.098 6.098 14 C 0.001 3.999 15 N -0.195 5.195 16 C -0.284 4.284 17 C 0.243 3.757 18 N -0.337 5.337 19 N -0.317 5.317 20 H 0.079 0.921 21 H 0.058 0.942 22 H 0.049 0.951 23 H 0.340 0.660 24 H 0.253 0.747 25 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 10.041 -13.187 -1.353 16.630 hybrid contribution 0.472 0.438 0.305 0.713 sum 10.513 -12.749 -1.048 16.558 Atomic orbital electron populations 1.70036 1.07378 1.28407 1.50195 1.25787 0.95853 1.02702 0.94105 0.85437 0.78318 0.77936 0.78947 1.19306 1.19870 1.19706 1.20927 0.92541 0.90504 1.52614 0.93623 1.17971 0.91224 0.87226 0.98185 1.23519 0.90193 0.90820 0.79929 1.67186 1.17251 1.13398 1.31958 1.20515 0.93515 0.92369 0.85995 1.84436 1.49743 1.40841 1.34732 1.29766 0.91687 0.90526 0.87913 1.70260 1.17584 1.17096 1.14568 1.20539 1.08309 1.04065 0.95519 1.18073 0.85797 0.86013 0.85781 1.42056 1.49349 1.38848 1.03492 1.68091 1.18654 1.14684 1.30269 0.92117 0.94235 0.95075 0.66012 0.74664 0.73761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.85 13.29 21.45 0.28 -54.56 15 2 C 0.02 0.86 5.46 84.66 0.46 1.32 15 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 5 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 7 C -0.53 -30.99 9.09 25.60 0.23 -30.76 15 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 15 9 C 0.09 5.18 5.39 29.10 0.16 5.34 15 10 C 0.42 21.01 6.82 138.72 0.95 21.95 15 11 N -0.57 -27.47 10.34 -301.01 -3.11 -30.59 15 12 C 0.26 10.54 8.66 85.06 0.74 11.28 15 13 O -0.21 -6.54 10.75 -6.72 -0.07 -6.61 15 14 C 0.23 4.68 13.13 130.52 1.71 6.40 15 15 N -0.47 -12.53 11.33 -307.75 -3.49 -16.01 15 16 C -0.16 -5.78 7.18 39.58 0.28 -5.50 15 17 C 0.50 17.88 7.87 133.42 1.05 18.93 15 18 N -0.79 -19.22 9.05 -54.71 -0.50 -19.72 15 19 N -0.59 -25.99 10.34 -184.87 -1.91 -27.90 15 20 H 0.27 14.99 8.31 -92.71 -0.77 14.21 15 21 H 0.04 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.03 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.33 1.27 8.06 -2.91 -0.02 1.24 15 24 H 0.42 8.76 8.95 -92.71 -0.83 7.93 15 25 H 0.43 7.95 8.85 -92.71 -0.82 7.13 15 Total: -1.00 -75.03 237.77 -1.57 -76.60 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -0.39 Total: 3.16 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 5.58 Total: 28.96 kcal Atomic # 7 Polarization: -140.06 SS G_CDS: -8.72 Total: -148.78 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.07 Total: -6.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -75.03 -1.57 -76.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939887.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.136 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds