Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42097 * 110.54046 * 2 1 4 4 O 1.42095 * 110.54025 * 223.24544 * 2 1 3 5 5 N 1.65602 * 104.44835 * 111.62129 * 2 1 3 6 6 C 1.47583 * 134.48878 * 89.99837 * 5 2 1 7 7 C 1.53947 * 86.11463 * 155.35840 * 6 5 2 8 8 N 1.46498 * 113.74108 * 137.95239 * 7 6 5 9 9 C 1.36936 * 120.00235 * 155.00282 * 8 7 6 10 10 H 1.08001 * 119.99775 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00341 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00226 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99961 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47041 * 90.00260 * 13 11 9 15 15 H 1.48497 * 109.47004 * 210.00442 * 13 11 9 16 16 H 1.48494 * 109.46906 * 329.99877 * 13 11 9 17 17 C 1.47573 * 134.49446 * 269.99965 * 5 2 1 18 18 H 1.09000 * 109.47141 * 308.37903 * 1 2 3 19 19 H 1.09003 * 109.47087 * 68.37659 * 1 2 3 20 20 H 1.09000 * 109.46836 * 188.37950 * 1 2 3 21 21 H 1.08996 * 113.77114 * 41.06183 * 6 5 2 22 22 H 1.09000 * 113.77347 * 269.66103 * 6 5 2 23 23 H 1.08999 * 113.74208 * 269.26384 * 7 6 5 24 24 H 0.97003 * 120.00440 * 335.00241 * 8 7 6 25 25 H 0.97003 * 120.00287 * 179.97438 * 12 11 9 26 26 H 1.09003 * 113.77162 * 90.34224 * 17 5 2 27 27 H 1.09004 * 113.77283 * 318.94196 * 17 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 2.4852 -1.9387 2.0339 7 6 3.3357 -1.2304 3.1040 8 7 3.1495 -1.7659 4.4549 9 6 4.1425 -1.6304 5.3880 10 1 5.0631 -1.1292 5.1280 11 6 3.9663 -2.1382 6.6678 12 7 4.9205 -2.0076 7.5649 13 14 2.3742 -3.0059 7.1174 14 1 2.5023 -4.4567 6.8279 15 1 2.0962 -2.8122 8.5633 16 1 1.2585 -2.4382 6.3186 17 6 2.4853 0.0187 2.8098 18 1 -0.3633 0.6380 0.8056 19 1 -0.3633 0.3787 -0.9554 20 1 -0.3633 -1.0167 0.1498 21 1 3.0627 -2.5782 1.3664 22 1 1.5972 -2.4293 2.4323 23 1 4.3849 -1.1216 2.8295 24 1 2.3228 -2.2164 4.6884 25 1 4.7973 -2.3621 8.4593 26 1 1.5972 0.1031 3.4361 27 1 3.0627 0.9419 2.7617 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980702.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -43.466640 kcal Electronic energy + Delta-G solvation = -13236.137718 eV Core-core repulsion = 10736.114517 eV Total energy + Delta-G solvation = -2500.023202 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.067 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.08351 -38.11848 -36.98644 -35.70221 -32.97975 -30.30627 -28.58919 -26.99038 -24.97745 -21.73046 -19.86783 -19.37962 -18.48729 -17.54471 -17.04741 -16.78108 -15.94394 -15.28885 -14.97437 -14.59616 -14.04178 -13.96815 -13.74700 -13.45222 -13.18279 -13.17528 -13.09667 -12.91993 -12.38888 -12.09050 -11.91190 -11.89915 -11.67365 -10.93123 -9.91929 -9.30336 -7.97825 -5.33772 -0.68760 1.44220 1.49352 1.55936 1.62603 2.54267 3.00586 3.06679 3.32544 3.68713 3.74386 4.01881 4.10367 4.13813 4.38674 4.67021 4.70025 4.91697 4.92195 5.01497 5.32946 5.59612 5.83524 6.25524 7.11447 7.83872 8.05814 9.23402 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.061681 B = 0.006928 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.836770 B = 4040.320034 C = 4189.429189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.639 3.361 3 O -0.998 6.998 4 O -0.994 6.994 5 N -1.038 6.038 6 C 0.116 3.884 7 C 0.145 3.855 8 N -0.734 5.734 9 C -0.238 4.238 10 H 0.056 0.944 11 C -0.063 4.063 12 N -0.986 5.986 13 Si 0.958 3.042 14 H -0.279 1.279 15 H -0.302 1.302 16 H -0.240 1.240 17 C 0.100 3.900 18 H 0.142 0.858 19 H 0.146 0.854 20 H 0.146 0.854 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.080 0.920 24 H 0.373 0.627 25 H 0.257 0.743 26 H 0.096 0.904 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 1.644 -14.005 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.738 3.262 3 O -0.989 6.989 4 O -0.985 6.985 5 N -0.876 5.876 6 C -0.010 4.010 7 C 0.033 3.967 8 N -0.377 5.377 9 C -0.369 4.369 10 H 0.074 0.926 11 C -0.255 4.255 12 N -0.635 5.635 13 Si 0.785 3.215 14 H -0.205 1.205 15 H -0.229 1.229 16 H -0.164 1.164 17 C -0.028 4.028 18 H 0.161 0.839 19 H 0.164 0.836 20 H 0.164 0.836 21 H 0.106 0.894 22 H 0.123 0.877 23 H 0.098 0.902 24 H 0.207 0.793 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.068 2.052 -14.809 19.856 hybrid contribution -0.975 -0.453 0.965 1.445 sum -14.043 1.599 -13.844 19.784 Atomic orbital electron populations 1.30372 1.23626 1.13333 1.13029 1.03817 0.79109 0.72126 0.71132 1.93540 1.79907 1.39474 1.85937 1.93538 1.79855 1.62587 1.62513 1.59845 1.85299 1.18307 1.24168 1.23319 0.99485 0.84454 0.93750 1.22405 0.98010 0.93044 0.83261 1.42620 1.17461 1.68854 1.08720 1.19074 0.96181 1.30120 0.91541 0.92566 1.25575 1.01505 1.02329 0.96078 1.69904 1.35638 1.52991 1.05011 0.85370 0.80422 0.78752 0.76933 1.20469 1.22912 1.16443 1.23677 0.99910 0.99064 0.80167 0.83915 0.83555 0.83569 0.89370 0.87683 0.90205 0.79264 0.93380 0.88559 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.38 10.99 113.37 1.25 -6.13 15 2 S 2.64 59.44 6.57 -56.49 -0.37 59.07 15 3 O -1.00 -30.38 18.02 -127.65 -2.30 -32.68 15 4 O -0.99 -29.06 18.02 -127.65 -2.30 -31.37 15 5 N -1.04 -25.82 3.99 -530.17 -2.12 -27.93 15 6 C 0.12 2.96 8.67 86.48 0.75 3.71 15 7 C 0.15 4.93 4.67 46.75 0.22 5.15 15 8 N -0.73 -30.60 5.21 -327.80 -1.71 -32.31 15 9 C -0.24 -12.80 10.45 84.03 0.88 -11.92 15 10 H 0.06 3.37 8.06 -2.91 -0.02 3.35 15 11 C -0.06 -3.57 5.50 84.86 0.47 -3.10 15 12 N -0.99 -61.54 13.97 21.65 0.30 -61.24 15 13 Si 0.96 42.29 27.74 68.60 1.90 44.19 15 14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 15 H -0.30 -13.84 7.11 99.48 0.71 -13.13 15 16 H -0.24 -9.05 6.52 99.48 0.65 -8.40 15 17 C 0.10 2.86 8.71 86.48 0.75 3.61 15 18 H 0.14 1.31 8.14 -2.39 -0.02 1.29 15 19 H 0.15 1.12 8.14 -2.39 -0.02 1.11 15 20 H 0.15 1.21 8.14 -2.39 -0.02 1.19 15 21 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.11 2.12 8.12 -2.39 -0.02 2.10 15 23 H 0.08 2.97 8.10 -2.39 -0.02 2.95 15 24 H 0.37 14.23 5.79 -92.71 -0.54 13.69 15 25 H 0.26 15.34 8.31 -92.71 -0.77 14.57 15 26 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 15 Total: -1.00 -75.16 250.49 -1.71 -76.86 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.58 Total: 14.09 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.31 Total: -8.69 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -3.52 Total: -121.48 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -4.60 Total: -64.05 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.90 Total: 44.19 kcal Atomic # 16 Polarization: 59.44 SS G_CDS: -0.37 Total: 59.07 kcal Total: -75.16 -1.71 -76.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980702.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.395 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds