Wall clock time and date at job start Mon Mar 30 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48504 * 109.47092 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46868 * 299.99923 * 3 2 1 6 6 H 1.48497 * 109.46871 * 60.00012 * 3 2 1 7 7 C 1.39696 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00211 * 180.02562 * 7 2 1 9 9 C 1.41381 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46779 * 127.41102 * 359.97438 * 9 7 2 11 11 C 1.34297 * 106.49562 * 180.02562 * 10 9 7 12 12 O 1.34440 * 109.22064 * 359.96695 * 11 10 9 13 13 C 1.33861 * 111.21022 * 0.03374 * 12 11 10 14 14 C 1.50696 * 126.04966 * 180.24724 * 13 12 11 15 15 C 1.52996 * 117.50112 * 8.43719 * 14 13 12 16 16 C 1.52999 * 117.49931 * 299.77503 * 14 13 12 17 17 C 1.51386 * 107.53131 * 179.97438 * 11 10 9 18 18 O 1.43971 * 105.91624 * 17.56349 * 17 11 10 19 19 C 1.44032 * 104.20850 * 332.22313 * 18 17 11 20 20 H 0.96990 * 119.99936 * 0.02562 * 1 2 3 21 21 H 1.09009 * 115.54662 * 154.10796 * 14 13 12 22 22 H 1.08993 * 117.50045 * 0.02562 * 15 14 13 23 23 H 1.09002 * 117.49881 * 145.02007 * 15 14 13 24 24 H 1.09004 * 117.50090 * 214.98248 * 16 14 13 25 25 H 1.08994 * 117.49995 * 359.97438 * 16 14 13 26 26 H 1.09000 * 110.16300 * 136.67510 * 17 11 10 27 27 H 1.08995 * 110.16340 * 258.38311 * 17 11 10 28 28 H 1.09006 * 110.19105 * 268.60006 * 19 18 17 29 29 H 1.09000 * 110.19556 * 146.74393 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7043 1.3463 -0.0006 5 1 1.8855 2.3964 -1.2126 6 1 1.8855 2.3964 1.2125 7 6 2.0087 -1.2098 -0.0005 8 1 3.0887 -1.2099 -0.0001 9 6 1.3018 -2.4342 -0.0005 10 6 -0.1537 -2.6235 0.0005 11 6 -0.3658 -3.9497 0.0006 12 8 0.8179 -4.5871 -0.0009 13 6 1.8360 -3.7181 -0.0014 14 6 3.3015 -4.0690 -0.0084 15 6 3.6752 -5.5382 -0.2146 16 6 3.8361 -4.8935 1.1644 17 6 -1.8632 -4.1720 0.0024 18 8 -2.4481 -2.9243 -0.4147 19 6 -1.4923 -1.9298 -0.0001 20 1 -0.4849 0.8400 -0.0004 21 1 3.9631 -3.3163 -0.4374 22 1 2.8611 -6.2509 -0.3457 23 1 4.5829 -5.7522 -0.7791 24 1 4.8495 -4.6836 1.5066 25 1 3.1279 -5.1817 1.9411 26 1 -2.1263 -4.9634 -0.6994 27 1 -2.2034 -4.4311 1.0049 28 1 -1.7314 -1.5726 1.0016 29 1 -1.4847 -1.0983 -0.7049 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:23 Heat of formation + Delta-G solvation = 17.189994 kcal Electronic energy + Delta-G solvation = -14876.698491 eV Core-core repulsion = 12347.401950 eV Total energy + Delta-G solvation = -2529.296541 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88883 -37.81884 -36.07275 -33.98222 -30.76374 -29.29683 -27.45947 -25.29340 -23.24387 -21.78864 -21.03771 -20.07580 -17.98831 -16.74001 -15.58434 -15.43051 -15.05777 -14.78864 -14.41339 -13.87086 -13.59011 -12.67516 -12.27043 -11.82941 -11.78131 -11.35870 -11.18948 -11.00240 -10.97273 -10.29695 -10.16113 -10.02701 -9.82181 -9.56425 -9.40042 -9.12972 -7.86489 -6.86928 -6.61011 -4.28591 2.82721 3.08530 3.10016 3.13738 3.70623 3.89723 3.95656 4.61622 4.91746 5.30267 5.35142 5.57104 5.75002 5.91989 5.96779 5.98997 6.12296 6.13401 6.32867 6.68427 6.76045 6.77930 6.94300 7.05567 7.18540 7.29639 7.47072 7.75903 7.84707 8.31667 8.73272 8.78900 9.02736 10.28512 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.014398 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.555825 B = 1944.249546 C = 3269.883965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.437 4.437 8 H 0.078 0.922 9 C 0.075 3.925 10 C -0.190 4.190 11 C -0.125 4.125 12 O -0.171 6.171 13 C -0.181 4.181 14 C -0.010 4.010 15 C -0.190 4.190 16 C -0.189 4.189 17 C 0.160 3.840 18 O -0.385 6.385 19 C 0.140 3.860 20 H 0.277 0.723 21 H 0.117 0.883 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -3.061 0.700 3.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.141 4.141 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.096 0.904 9 C 0.072 3.928 10 C -0.193 4.193 11 C -0.176 4.176 12 O -0.072 6.072 13 C -0.228 4.228 14 C -0.028 4.028 15 C -0.227 4.227 16 C -0.226 4.226 17 C 0.082 3.918 18 O -0.304 6.304 19 C 0.065 3.935 20 H 0.088 0.912 21 H 0.134 0.866 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.016 -3.143 0.592 3.356 hybrid contribution 0.606 0.894 0.215 1.102 sum 1.622 -2.249 0.807 2.888 Atomic orbital electron populations 1.69798 1.07161 1.28085 1.39798 1.25869 0.95021 1.01198 0.92020 0.86103 0.80453 0.80749 0.78384 1.18674 1.19989 1.20019 1.18879 0.94114 0.88920 1.44885 0.90399 1.18171 0.88234 0.91801 0.94584 1.22217 0.95407 0.92762 1.08900 1.23026 0.88935 0.93504 1.12109 1.83042 1.11436 1.36813 1.75945 1.21010 0.85963 0.86102 1.29741 1.19708 0.89017 0.92969 1.01068 1.22899 1.02479 0.97341 0.99968 1.23033 1.01396 1.06109 0.92036 1.20729 0.82864 0.88630 0.99548 1.89165 1.43478 1.15875 1.81886 1.21427 0.82476 0.89095 1.00468 0.91205 0.86556 0.89160 0.89466 0.89414 0.89355 0.90117 0.91622 0.92859 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.72 8.12 55.54 0.45 -20.27 15 2 C 0.07 1.82 5.49 -17.35 -0.10 1.72 15 3 Si 0.92 18.87 29.56 -169.99 -5.02 13.85 15 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 6 H -0.27 -5.58 7.11 56.52 0.40 -5.17 15 7 C -0.44 -11.68 9.20 -37.84 -0.35 -12.03 15 8 H 0.08 1.99 7.51 -52.49 -0.39 1.59 15 9 C 0.07 2.06 6.10 -104.95 -0.64 1.42 15 10 C -0.19 -5.05 6.27 -102.53 -0.64 -5.69 15 11 C -0.13 -3.09 8.37 -35.36 -0.30 -3.39 15 12 O -0.17 -4.34 10.25 6.51 0.07 -4.27 15 13 C -0.18 -4.57 6.97 -34.01 -0.24 -4.81 15 14 C -0.01 -0.20 6.00 -91.78 -0.55 -0.75 15 15 C -0.19 -3.31 10.17 -26.70 -0.27 -3.58 15 16 C -0.19 -3.34 10.24 -26.69 -0.27 -3.62 15 17 C 0.16 3.23 7.64 36.34 0.28 3.51 15 18 O -0.38 -8.58 11.78 -35.23 -0.41 -8.99 15 19 C 0.14 3.38 5.77 36.04 0.21 3.59 15 20 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 21 H 0.12 2.33 7.86 -51.92 -0.41 1.92 15 22 H 0.09 1.64 7.98 -51.93 -0.41 1.22 15 23 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.09 1.63 8.14 -51.93 -0.42 1.21 15 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 28 H 0.05 1.28 8.13 -51.93 -0.42 0.85 15 29 H 0.12 2.96 6.24 -51.93 -0.32 2.63 15 LS Contribution 249.98 15.07 3.77 3.77 Total: -1.00 -28.61 249.98 -7.23 -35.85 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.21 Total: 3.70 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -2.87 Total: -23.62 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.45 Total: -20.27 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.35 Total: -13.27 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.61 -7.23 -35.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.035 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds