Wall clock time and date at job start Mon Mar 30 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.92535 * 2 1 4 4 C 1.38237 * 120.14125 * 179.97438 * 3 2 1 5 5 C 1.38550 * 120.02960 * 0.06285 * 4 3 2 6 6 C 1.39263 * 119.82864 * 0.02562 * 5 4 3 7 7 C 1.38236 * 119.93268 * 180.08882 * 2 1 3 8 8 C 1.50705 * 119.97919 * 0.25284 * 7 2 1 9 9 C 1.50701 * 109.46921 * 269.72578 * 8 7 2 10 10 H 1.07996 * 120.00342 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00211 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47001 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47362 * 119.99911 * 13 11 9 16 16 H 1.48506 * 109.47127 * 239.99837 * 13 11 9 17 17 O 1.36502 * 108.64186 * 179.97438 * 6 5 4 18 18 C 1.43989 * 105.47914 * 342.71874 * 17 6 5 19 19 O 1.36507 * 131.53179 * 179.97438 * 5 4 3 20 20 H 1.09001 * 109.47031 * 269.91074 * 1 2 3 21 21 H 1.09002 * 109.46763 * 29.91324 * 1 2 3 22 22 H 1.08998 * 109.46677 * 149.91122 * 1 2 3 23 23 H 1.08000 * 119.93310 * 0.05335 * 3 2 1 24 24 H 1.07999 * 119.98887 * 180.09139 * 4 3 2 25 25 H 1.08995 * 109.47485 * 29.72162 * 8 7 2 26 26 H 1.08998 * 109.46644 * 149.72752 * 8 7 2 27 27 H 0.97001 * 119.99593 * 179.97438 * 12 11 9 28 28 H 1.08994 * 110.57608 * 268.55160 * 18 17 6 29 29 H 1.09007 * 110.69476 * 145.74673 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1982 0.0000 4 6 3.5791 1.2034 0.0005 5 6 4.2770 0.0066 -0.0002 6 6 3.5822 -1.2004 -0.0021 7 6 2.1968 -1.1980 -0.0019 8 6 1.4412 -2.5019 -0.0096 9 6 1.1899 -2.9453 1.4086 10 1 1.5423 -2.3433 2.2331 11 6 0.5109 -4.1199 1.6535 12 7 0.0821 -4.8533 0.6495 13 14 0.1999 -4.6699 3.4115 14 1 0.7796 -3.6766 4.3508 15 1 -1.2626 -4.7779 3.6450 16 1 0.8360 -5.9929 3.6361 17 8 4.4855 -2.2238 -0.0031 18 6 5.7334 -1.6346 -0.4141 19 8 5.6156 -0.2606 -0.0004 20 1 -0.3633 -0.0016 1.0277 21 1 -0.3633 0.8908 -0.5125 22 1 -0.3632 -0.8892 -0.5152 23 1 1.6544 2.1322 0.0009 24 1 4.1154 2.1409 0.0020 25 1 0.4889 -2.3670 -0.5222 26 1 2.0291 -3.2592 -0.5283 27 1 -0.3953 -5.6799 0.8219 28 1 5.8501 -1.7000 -1.4958 29 1 6.5713 -2.1161 0.0902 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003233.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:35 Heat of formation + Delta-G solvation = -67.554849 kcal Electronic energy + Delta-G solvation = -14735.358581 eV Core-core repulsion = 12202.387228 eV Total energy + Delta-G solvation = -2532.971353 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.00649 -39.32166 -37.21569 -35.37592 -33.27663 -32.14632 -29.10445 -27.80840 -26.20991 -25.34773 -23.09685 -22.03114 -18.70463 -18.50802 -18.30846 -18.03468 -16.98755 -16.49896 -15.57672 -15.18454 -14.82960 -14.53998 -14.46478 -13.99326 -13.83432 -13.46721 -13.22362 -13.01673 -12.81764 -12.70933 -12.39048 -12.22772 -11.64693 -11.38520 -11.26624 -10.59844 -9.39358 -8.85698 -8.20955 -6.32999 0.27915 0.42658 1.36792 1.37820 1.51068 1.94415 2.38065 2.68037 2.74210 3.09889 3.65763 3.86706 4.01696 4.17219 4.26367 4.35522 4.42053 4.62176 4.90154 4.92465 5.08049 5.16813 5.25009 5.32010 5.42532 5.48487 5.72376 5.74984 5.94639 6.13735 6.32418 6.77275 7.34316 8.88937 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029133 B = 0.009894 C = 0.008296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.863643 B = 2829.194478 C = 3374.430248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.088 4.088 3 C -0.100 4.100 4 C -0.110 4.110 5 C 0.006 3.994 6 C 0.002 3.998 7 C -0.063 4.063 8 C 0.064 3.936 9 C -0.519 4.519 10 H 0.046 0.954 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.962 3.038 14 H -0.268 1.268 15 H -0.269 1.269 16 H -0.279 1.279 17 O -0.335 6.335 18 C 0.202 3.798 19 O -0.321 6.321 20 H 0.068 0.932 21 H 0.097 0.903 22 H 0.052 0.948 23 H 0.177 0.823 24 H 0.164 0.836 25 H 0.027 0.973 26 H -0.013 1.013 27 H 0.266 0.734 28 H 0.098 0.902 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 11.667 -2.091 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.089 4.089 3 C -0.118 4.118 4 C -0.128 4.128 5 C -0.038 4.038 6 C -0.042 4.042 7 C -0.063 4.063 8 C 0.027 3.973 9 C -0.557 4.557 10 H 0.065 0.935 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.787 3.213 14 H -0.193 1.193 15 H -0.194 1.194 16 H -0.205 1.205 17 O -0.252 6.252 18 C 0.091 3.909 19 O -0.237 6.237 20 H 0.087 0.913 21 H 0.116 0.884 22 H 0.070 0.930 23 H 0.194 0.806 24 H 0.182 0.818 25 H 0.045 0.955 26 H 0.006 0.994 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.049 11.403 -2.033 13.067 hybrid contribution 0.154 -1.235 0.624 1.392 sum 6.203 10.168 -1.409 11.994 Atomic orbital electron populations 1.20737 0.89415 1.03029 1.02681 1.19874 0.97514 0.91127 1.00360 1.21165 0.92430 0.98203 0.99958 1.20346 0.93652 0.94871 1.03956 1.20094 0.82337 0.95184 1.06161 1.19858 0.91875 0.85896 1.06530 1.19557 0.89290 0.98012 0.99478 1.18016 0.94054 0.88660 0.96568 1.21247 1.35662 1.06752 0.92056 0.93548 1.25860 0.95280 0.96341 1.01617 1.70080 1.39209 1.14908 1.32733 0.85437 0.78347 0.78098 0.79431 1.19265 1.19429 1.20456 1.87395 1.19725 1.32768 1.85307 1.26013 0.87640 0.75836 1.01369 1.87220 1.20612 1.30435 1.85479 0.91304 0.88397 0.92955 0.80578 0.81811 0.95524 0.99431 0.92547 0.88424 0.82585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.42 9.60 71.24 0.68 -2.74 15 2 C -0.09 -3.31 5.88 -19.86 -0.12 -3.43 15 3 C -0.10 -2.87 9.69 22.27 0.22 -2.65 15 4 C -0.11 -3.25 10.06 22.34 0.22 -3.03 15 5 C 0.01 0.23 7.15 22.59 0.16 0.39 15 6 C 0.00 0.10 6.81 22.59 0.15 0.25 15 7 C -0.06 -2.94 5.08 -19.79 -0.10 -3.04 15 8 C 0.06 3.56 4.69 29.10 0.14 3.69 15 9 C -0.52 -30.76 9.09 25.60 0.23 -30.53 15 10 H 0.05 2.76 7.74 -2.91 -0.02 2.74 15 11 C 0.01 0.41 5.46 84.65 0.46 0.87 15 12 N -0.93 -56.97 13.29 21.45 0.28 -56.68 15 13 Si 0.96 45.45 29.54 68.60 2.03 47.48 15 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 17 O -0.33 -14.84 11.39 -76.08 -0.87 -15.70 15 18 C 0.20 6.18 8.89 113.37 1.01 7.18 15 19 O -0.32 -10.84 11.40 -76.13 -0.87 -11.71 15 20 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.10 2.36 8.08 -2.39 -0.02 2.34 15 22 H 0.05 2.03 5.93 -2.39 -0.01 2.01 15 23 H 0.18 3.36 8.06 -2.91 -0.02 3.34 15 24 H 0.16 3.52 8.06 -2.91 -0.02 3.50 15 25 H 0.03 1.51 5.93 -2.39 -0.01 1.50 15 26 H -0.01 -0.79 8.08 -2.39 -0.02 -0.81 15 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 28 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 29 H 0.16 3.53 8.14 -2.38 -0.02 3.51 15 Total: -1.00 -72.33 253.96 4.79 -67.54 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.16 Total: 2.10 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.06 Total: -33.02 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.73 Total: -27.41 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.33 4.79 -67.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003233.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.016 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds