Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39478 * 127.01855 * 2 1 4 4 C 1.39892 * 125.79676 * 0.22745 * 3 2 1 5 5 H 1.08005 * 120.00293 * 359.70897 * 4 3 2 6 6 C 1.40148 * 120.00084 * 179.71223 * 4 3 2 7 7 N 1.30804 * 119.99853 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99997 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47448 * 59.99575 * 8 6 4 10 10 H 1.48510 * 109.46817 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47142 * 299.99481 * 8 6 4 12 12 O 1.35385 * 108.40124 * 179.97438 * 3 2 1 13 13 C 1.32956 * 110.03500 * 359.93817 * 12 3 2 14 14 C 1.39490 * 108.22085 * 0.13026 * 13 12 3 15 15 C 1.47241 * 121.74129 * 179.81275 * 14 13 12 16 16 O 1.21300 * 122.45531 * 168.68698 * 15 14 13 17 17 C 1.52169 * 115.08864 * 348.70301 * 15 14 13 18 18 C 1.53188 * 108.37537 * 42.59752 * 17 15 14 19 19 C 1.50828 * 129.05904 * 180.26298 * 13 12 3 20 20 H 1.09004 * 109.47424 * 90.02054 * 1 2 3 21 21 H 1.09001 * 109.47451 * 210.01693 * 1 2 3 22 22 H 1.09003 * 109.46886 * 330.02078 * 1 2 3 23 23 H 0.96993 * 120.00043 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.68463 * 282.87318 * 17 15 14 25 25 H 1.09001 * 109.71207 * 162.33723 * 17 15 14 26 26 H 1.09007 * 109.22359 * 174.67934 * 18 17 15 27 27 H 1.08995 * 109.23084 * 55.31839 * 18 17 15 28 28 H 1.09007 * 109.50638 * 279.23923 * 19 13 12 29 29 H 1.09000 * 109.50927 * 39.32855 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3467 1.1137 0.0000 4 6 1.9334 2.4501 0.0045 5 1 0.8803 2.6897 0.0037 6 6 2.8859 3.4782 0.0100 7 7 4.1613 3.1880 0.0115 8 14 2.3340 5.2627 0.0168 9 1 1.5173 5.5238 1.2292 10 1 3.5254 6.1493 0.0227 11 1 1.5206 5.5339 -1.1958 12 8 3.6297 0.6814 0.0006 13 6 3.6626 -0.6477 0.0023 14 6 2.3488 -1.1165 -0.0001 15 6 2.0401 -2.5562 -0.0032 16 8 0.9221 -2.9826 0.1955 17 6 3.2266 -3.4699 -0.2734 18 6 4.4288 -2.9476 0.5193 19 6 4.8569 -1.5688 0.0089 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5141 22 1 -0.3633 0.8902 0.5135 23 1 4.8205 3.8995 0.0150 24 1 3.4588 -3.4649 -1.3383 25 1 2.9892 -4.4848 0.0458 26 1 5.2601 -3.6443 0.4113 27 1 4.1590 -2.8724 1.5727 28 1 5.2506 -1.6617 -1.0034 29 1 5.6275 -1.1611 0.6631 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260037070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = -77.962169 kcal Electronic energy + Delta-G solvation = -14789.526150 eV Core-core repulsion = 12256.103502 eV Total energy + Delta-G solvation = -2533.422648 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.68292 -39.90394 -36.61788 -35.52520 -34.24509 -30.81548 -29.63409 -28.87718 -26.12141 -23.24635 -23.10201 -20.52697 -20.11593 -18.63004 -17.12958 -16.77730 -16.56229 -16.09467 -15.67319 -15.17735 -15.02731 -14.65500 -14.06778 -13.78210 -13.59770 -13.40261 -13.20818 -12.97043 -12.67492 -12.46271 -12.23794 -11.99139 -11.85352 -11.57190 -11.30910 -10.45500 -10.03782 -9.12820 -8.78159 -6.38663 0.45061 1.19352 1.37333 1.51400 1.75380 2.16437 2.34324 2.64303 3.14594 3.37891 3.96576 4.05518 4.22581 4.26834 4.53343 4.66121 4.75735 4.86867 4.93532 4.94597 5.01130 5.05777 5.08680 5.20339 5.29813 5.35500 5.75658 5.94081 6.13287 6.51861 6.62989 6.77211 7.13203 8.24470 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.041954 B = 0.009211 C = 0.007654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.237926 B = 3039.098889 C = 3657.297123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.345 4.345 3 C 0.162 3.838 4 C -0.473 4.473 5 H 0.109 0.891 6 C 0.024 3.976 7 N -0.817 5.817 8 Si 1.001 2.999 9 H -0.256 1.256 10 H -0.264 1.264 11 H -0.255 1.255 12 O -0.161 6.161 13 C -0.091 4.091 14 C -0.255 4.255 15 C 0.416 3.584 16 O -0.511 6.511 17 C -0.149 4.149 18 C -0.096 4.096 19 C -0.022 4.022 20 H 0.038 0.962 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.294 0.706 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -5.018 -0.577 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.347 4.347 3 C 0.111 3.889 4 C -0.502 4.502 5 H 0.127 0.873 6 C -0.193 4.193 7 N -0.444 5.444 8 Si 0.820 3.180 9 H -0.180 1.180 10 H -0.188 1.188 11 H -0.179 1.179 12 O -0.057 6.057 13 C -0.143 4.143 14 C -0.257 4.257 15 C 0.300 3.700 16 O -0.392 6.392 17 C -0.187 4.187 18 C -0.133 4.133 19 C -0.059 4.059 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.105 0.895 24 H 0.134 0.866 25 H 0.129 0.871 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.949 -5.012 -0.468 6.397 hybrid contribution -0.442 0.977 0.004 1.072 sum 3.506 -4.035 -0.464 5.366 Atomic orbital electron populations 1.19552 0.90186 0.99975 0.99360 1.20118 0.96191 0.91375 1.27060 1.19981 0.78691 0.94367 0.95881 1.19092 0.95857 0.87469 1.47794 0.87345 1.27094 0.94110 1.07007 0.91059 1.69804 1.02659 1.37882 1.34057 0.84951 0.78991 0.73633 0.80400 1.18026 1.18781 1.17933 1.84008 1.29674 1.20480 1.71500 1.23961 0.96870 0.82413 1.11093 1.20870 0.94069 0.95633 1.15161 1.22887 0.89426 0.88516 0.69215 1.90393 1.27342 1.80637 1.40844 1.22354 0.93127 0.99168 1.04025 1.21501 0.97952 0.94770 0.99090 1.20138 0.91085 0.91227 1.03466 0.94295 0.93669 0.93136 0.89546 0.86617 0.87126 0.85370 0.92324 0.88593 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.64 9.99 71.23 0.71 -0.93 15 2 C -0.34 -18.79 6.30 -19.18 -0.12 -18.91 15 3 C 0.16 9.32 6.78 22.97 0.16 9.48 15 4 C -0.47 -25.99 9.07 23.13 0.21 -25.78 15 5 H 0.11 5.61 7.28 -2.91 -0.02 5.59 15 6 C 0.02 1.21 5.50 85.31 0.47 1.68 15 7 N -0.82 -43.23 11.98 21.87 0.26 -42.97 15 8 Si 1.00 37.46 29.56 68.60 2.03 39.49 15 9 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 10 H -0.26 -9.22 7.11 99.48 0.71 -8.52 15 11 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 12 O -0.16 -9.06 8.84 -1.30 -0.01 -9.07 15 13 C -0.09 -4.30 7.41 26.03 0.19 -4.10 15 14 C -0.25 -12.58 6.09 -20.22 -0.12 -12.71 15 15 C 0.42 17.50 7.10 28.53 0.20 17.70 15 16 O -0.51 -24.11 16.84 -3.09 -0.05 -24.16 15 17 C -0.15 -4.12 6.16 30.38 0.19 -3.94 15 18 C -0.10 -2.35 5.79 30.70 0.18 -2.17 15 19 C -0.02 -0.71 6.24 29.93 0.19 -0.52 15 20 H 0.04 1.78 8.14 -2.38 -0.02 1.76 15 21 H 0.04 2.15 7.18 -2.39 -0.02 2.13 15 22 H 0.05 2.31 7.55 -2.39 -0.02 2.29 15 23 H 0.29 13.86 8.30 -92.71 -0.77 13.10 15 24 H 0.12 2.77 8.14 -2.39 -0.02 2.75 15 25 H 0.11 2.50 8.14 -2.39 -0.02 2.48 15 26 H 0.13 1.93 8.14 -2.38 -0.02 1.91 15 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 28 H 0.10 2.63 8.14 -2.38 -0.02 2.61 15 29 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 Total: -1.00 -69.47 252.28 5.64 -63.83 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.16 Total: 13.09 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.25 Total: -40.21 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.26 Total: -42.97 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.06 Total: -33.24 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -69.47 5.64 -63.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.129 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds