Wall clock time and date at job start Mon Mar 30 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.39868 * 125.47586 * 90.02014 * 10 9 7 12 12 C 1.30252 * 110.07125 * 180.02562 * 11 10 9 13 13 C 1.45940 * 107.80162 * 359.97438 * 12 11 10 14 14 C 1.39999 * 133.93244 * 180.02562 * 13 12 11 15 15 C 1.36424 * 119.82038 * 179.22546 * 14 13 12 16 16 C 1.38990 * 120.65814 * 0.62010 * 15 14 13 17 17 C 1.37769 * 120.63595 * 359.59847 * 16 15 14 18 18 F 1.35096 * 120.15133 * 179.97438 * 17 16 15 19 19 C 1.37100 * 125.47088 * 269.71654 * 10 9 7 20 20 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 22 22 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 23 23 H 1.07993 * 126.09970 * 180.02562 * 12 11 10 24 24 H 1.07992 * 120.08709 * 359.95283 * 14 13 12 25 25 H 1.07999 * 119.66692 * 180.22001 * 15 14 13 26 26 H 1.08001 * 119.68274 * 179.62209 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 7 2.7345 -4.2325 1.1238 12 6 3.5497 -5.1857 0.7727 13 6 3.5842 -5.2286 -0.6857 14 6 4.2619 -6.0229 -1.6183 15 6 4.0650 -5.8197 -2.9529 16 6 3.2065 -4.8217 -3.3987 17 6 2.5314 -4.0238 -2.5012 18 9 1.6997 -3.0563 -2.9454 19 6 2.7117 -4.2185 -1.1317 20 1 -0.4850 -0.8400 0.0004 21 1 0.6281 -2.5591 0.8866 22 1 0.6207 -2.5548 -0.8933 23 1 4.1011 -5.8299 1.4414 24 1 4.9297 -6.8021 -1.2820 25 1 4.5864 -6.4362 -3.6701 26 1 3.0670 -4.6706 -4.4590 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260040921.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:11 Heat of formation + Delta-G solvation = 33.925299 kcal Electronic energy + Delta-G solvation = -14322.595657 eV Core-core repulsion = 11702.857260 eV Total energy + Delta-G solvation = -2619.738397 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.30784 -40.66438 -36.76413 -34.00291 -31.86921 -29.58352 -29.53074 -26.43224 -23.28228 -22.75924 -21.84929 -20.21360 -17.50456 -17.00602 -16.46222 -15.74007 -15.32544 -14.85529 -14.30677 -13.95023 -13.79030 -13.42404 -12.79120 -12.50826 -12.09053 -11.45609 -11.28703 -11.24674 -11.05160 -10.76086 -10.30825 -10.17018 -9.77815 -8.88547 -8.57180 -8.39440 -7.27452 -6.57340 -4.33764 1.15288 1.75823 2.90716 3.09104 3.37283 3.38715 3.57931 3.95110 4.40562 4.59484 4.83237 5.03394 5.08501 5.18404 5.29046 5.46053 5.83758 5.98992 6.30887 6.34227 6.55197 6.61707 6.65239 6.95979 7.12510 7.56481 7.67693 8.18369 8.27424 8.57202 9.35071 10.78707 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.034746 B = 0.009508 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.647533 B = 2944.128501 C = 3301.265967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 1.076 2.924 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.616 4.616 8 H 0.057 0.943 9 C 0.250 3.750 10 N -0.350 5.350 11 N -0.236 5.236 12 C 0.038 3.962 13 C -0.170 4.170 14 C -0.055 4.055 15 C -0.148 4.148 16 C -0.124 4.124 17 C 0.091 3.909 18 F -0.130 7.130 19 C 0.099 3.901 20 H 0.268 0.732 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.192 0.808 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.244 -10.974 -4.497 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.902 3.098 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.654 4.654 8 H 0.075 0.925 9 C 0.132 3.868 10 N -0.135 5.135 11 N -0.050 5.050 12 C -0.157 4.157 13 C -0.179 4.179 14 C -0.076 4.076 15 C -0.168 4.168 16 C -0.145 4.145 17 C 0.068 3.932 18 F -0.109 7.109 19 C -0.021 4.021 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.209 0.791 24 H 0.145 0.855 25 H 0.146 0.854 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.310 -8.487 -3.467 11.129 hybrid contribution 0.394 -1.836 -0.720 2.011 sum 6.704 -10.323 -4.187 13.001 Atomic orbital electron populations 1.70831 1.06747 1.30515 1.45418 1.25907 0.96309 1.02660 0.92922 0.83445 0.74885 0.74612 0.76830 1.20331 1.21151 1.21139 1.22137 0.94969 0.90800 1.57522 0.92502 1.19811 0.86573 0.81711 0.98674 1.49131 1.37015 1.28163 0.99240 1.76606 1.10371 1.07384 1.10664 1.24910 1.00008 0.98413 0.92334 1.19815 1.03592 1.00706 0.93768 1.20239 0.97716 0.97728 0.91875 1.20309 1.01222 0.99819 0.95432 1.20854 0.98179 0.96467 0.99027 1.16722 0.96332 0.91492 0.88623 1.91536 1.69164 1.60702 1.89448 1.18896 0.98150 0.96113 0.88931 0.92199 0.93918 0.93660 0.79113 0.85536 0.85364 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.65 55.43 0.76 -26.27 15 2 C 0.03 0.79 5.46 -17.82 -0.10 0.69 15 3 Si 1.08 25.47 29.90 -169.99 -5.08 20.39 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.62 -17.95 9.39 -34.44 -0.32 -18.27 15 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 15 9 C 0.25 6.73 5.24 -5.19 -0.03 6.70 15 10 N -0.35 -8.51 3.63 -59.83 -0.22 -8.72 15 11 N -0.24 -5.21 12.40 31.87 0.40 -4.81 15 12 C 0.04 0.66 12.28 -15.14 -0.19 0.47 15 13 C -0.17 -3.03 6.36 -105.21 -0.67 -3.69 15 14 C -0.05 -0.76 10.06 -39.58 -0.40 -1.15 15 15 C -0.15 -1.93 9.96 -39.96 -0.40 -2.32 15 16 C -0.12 -1.90 9.99 -39.47 -0.39 -2.29 15 17 C 0.09 1.83 7.32 -39.28 -0.29 1.54 15 18 F -0.13 -2.90 15.91 2.25 0.04 -2.87 15 19 C 0.10 2.14 6.88 -84.10 -0.58 1.56 15 20 H 0.27 7.95 7.22 -40.82 -0.29 7.65 15 21 H 0.04 1.18 8.01 -51.93 -0.42 0.76 15 22 H 0.05 1.24 6.88 -51.93 -0.36 0.89 15 23 H 0.19 2.30 8.06 -52.49 -0.42 1.88 15 24 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 25 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 26 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 LS Contribution 241.92 15.07 3.65 3.65 Total: -1.00 -32.51 241.92 -5.79 -38.30 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -1.97 Total: -2.90 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -3.36 Total: -16.76 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.93 Total: -39.81 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.51 -5.79 -38.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260040921.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.225 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds