Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36895 * 120.00141 * 2 1 4 4 H 1.07996 * 120.00257 * 220.26962 * 3 2 1 5 5 C 1.38885 * 120.00157 * 40.26172 * 3 2 1 6 6 N 1.31503 * 119.99847 * 357.14397 * 5 3 2 7 7 Si 1.86800 * 120.00082 * 177.14002 * 5 3 2 8 8 H 1.48498 * 109.47250 * 90.00274 * 7 5 3 9 9 H 1.48503 * 109.46673 * 210.00303 * 7 5 3 10 10 H 1.48497 * 109.47100 * 330.00121 * 7 5 3 11 11 C 1.38037 * 119.99935 * 179.97438 * 2 1 3 12 12 N 1.33361 * 120.96401 * 6.03328 * 11 2 1 13 13 C 1.31915 * 120.90973 * 179.97438 * 12 11 2 14 14 N 1.31836 * 122.91944 * 0.04474 * 13 12 11 15 15 C 1.32540 * 120.66889 * 359.97354 * 14 13 12 16 16 O 1.34072 * 136.39074 * 179.97438 * 15 14 13 17 17 N 1.20995 * 112.96816 * 180.02562 * 16 15 14 18 18 C 1.30218 * 113.38920 * 359.97438 * 17 16 15 19 19 C 1.39762 * 120.96304 * 186.07162 * 11 2 1 20 20 H 1.08991 * 109.47002 * 273.90446 * 1 2 3 21 21 H 1.08994 * 109.46848 * 33.91397 * 1 2 3 22 22 H 1.09006 * 109.46773 * 153.90994 * 1 2 3 23 23 H 0.96996 * 120.00024 * 180.02562 * 6 5 3 24 24 H 1.08012 * 118.53961 * 180.02562 * 13 12 11 25 25 H 1.07997 * 127.35998 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1855 0.0000 4 1 3.0376 1.2964 -0.6045 5 6 1.7019 2.2459 0.7773 6 7 0.5899 2.1301 1.4696 7 14 2.6796 3.8364 0.8395 8 1 2.2094 4.7488 -0.2335 9 1 2.4857 4.4851 2.1612 10 1 4.1210 3.5395 0.6405 11 6 2.1552 -1.1954 0.0005 12 7 1.5134 -2.3583 -0.1191 13 6 2.1741 -3.5001 -0.1190 14 7 3.4855 -3.5690 -0.0022 15 6 4.2119 -2.4675 0.1223 16 8 5.5128 -2.1727 0.2576 17 7 5.7215 -0.9837 0.3396 18 6 4.6385 -0.2633 0.2773 19 6 3.5468 -1.2223 0.1273 20 1 -0.3633 0.0700 1.0252 21 1 -0.3633 0.8528 -0.5734 22 1 -0.3633 -0.9230 -0.4520 23 1 0.2771 2.8708 2.0122 24 1 1.6158 -4.4194 -0.2187 25 1 4.5636 0.8129 0.3266 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260053977.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = 116.655003 kcal Electronic energy + Delta-G solvation = -14702.437075 eV Core-core repulsion = 12106.206068 eV Total energy + Delta-G solvation = -2596.231006 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.74525 -39.36293 -36.65688 -33.02841 -32.52693 -31.55286 -29.80979 -26.93634 -25.58780 -23.22775 -22.98009 -20.97215 -18.87718 -17.16708 -16.99332 -16.89624 -16.32929 -15.04843 -14.26564 -14.02288 -13.73160 -13.31103 -12.97868 -12.76846 -11.82488 -11.43815 -11.29015 -11.07503 -10.97205 -10.66998 -10.51234 -9.89075 -9.47333 -9.21674 -8.92783 -8.34237 -7.31945 -6.81770 -4.49650 1.62079 2.10115 2.88365 2.95251 2.98265 3.03411 3.22529 3.65038 4.26557 4.43940 4.78593 4.90250 5.23756 5.37260 5.60204 5.93588 6.10441 6.38182 6.62275 6.68216 6.90988 7.02510 7.04198 7.58942 7.72612 8.19180 8.67613 8.79878 9.06390 9.30968 10.13421 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.012223 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.785496 B = 2290.255608 C = 3083.852748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.370 5.370 3 C -0.332 4.332 4 H 0.102 0.898 5 C 0.051 3.949 6 N -0.846 5.846 7 Si 0.930 3.070 8 H -0.270 1.270 9 H -0.275 1.275 10 H -0.261 1.261 11 C 0.432 3.568 12 N -0.611 5.611 13 C 0.374 3.626 14 N -0.594 5.594 15 C 0.270 3.730 16 O 0.058 5.942 17 N -0.378 5.378 18 C 0.081 3.919 19 C -0.325 4.325 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.280 0.720 24 H 0.193 0.807 25 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -0.989 -1.626 1.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.054 5.054 3 C -0.462 4.462 4 H 0.120 0.880 5 C -0.160 4.160 6 N -0.477 5.477 7 Si 0.754 3.246 8 H -0.195 1.195 9 H -0.200 1.200 10 H -0.185 1.185 11 C 0.181 3.819 12 N -0.344 5.344 13 C 0.082 3.918 14 N -0.333 5.333 15 C 0.083 3.917 16 O 0.012 5.988 17 N -0.095 5.095 18 C -0.106 4.106 19 C -0.342 4.342 20 H 0.089 0.911 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.209 0.791 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.696 -1.094 -1.420 1.923 hybrid contribution -0.102 1.666 0.151 1.676 sum 0.594 0.573 -1.269 1.514 Atomic orbital electron populations 1.21727 0.79233 0.99983 1.02717 1.42507 1.05701 1.01349 1.55824 1.19763 1.12378 0.87550 1.26479 0.88022 1.25720 0.96076 1.00464 0.93762 1.69940 1.19249 1.33164 1.25381 0.85868 0.80167 0.80067 0.78513 1.19477 1.20019 1.18540 1.17945 0.85511 0.86723 0.91718 1.68101 1.39441 0.97325 1.29565 1.24375 0.85117 0.95135 0.87221 1.67219 1.06866 1.28455 1.30792 1.21603 0.85801 0.90969 0.93314 1.84680 1.21839 1.19646 1.72670 1.73598 1.23835 0.88686 1.23338 1.25794 0.86185 1.01237 0.97350 1.20688 0.95640 0.94999 1.22841 0.91138 0.92090 0.92597 0.90963 0.79098 0.78250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 8.89 59.85 0.53 2.82 15 2 N -0.37 -8.70 3.04 -122.26 -0.37 -9.07 15 3 C -0.33 -7.74 7.65 -15.05 -0.12 -7.85 15 4 H 0.10 2.28 5.84 -52.49 -0.31 1.98 15 5 C 0.05 1.15 5.40 -17.45 -0.09 1.05 15 6 N -0.85 -20.03 11.12 55.49 0.62 -19.41 15 7 Si 0.93 17.54 29.55 -169.99 -5.02 12.52 15 8 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 9 H -0.28 -5.24 7.11 56.52 0.40 -4.84 15 10 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 11 C 0.43 10.09 7.36 -154.89 -1.14 8.95 15 12 N -0.61 -13.13 9.21 -13.77 -0.13 -13.26 15 13 C 0.37 7.14 12.22 -92.02 -1.12 6.02 15 14 N -0.59 -12.50 10.46 -14.52 -0.15 -12.65 15 15 C 0.27 6.05 8.82 -16.13 -0.14 5.91 15 16 O 0.06 1.26 11.11 17.07 0.19 1.45 15 17 N -0.38 -8.07 11.96 31.87 0.38 -7.69 15 18 C 0.08 1.72 10.93 -15.10 -0.17 1.55 15 19 C -0.33 -7.49 6.03 -105.07 -0.63 -8.12 15 20 H 0.07 1.61 7.21 -51.93 -0.37 1.23 15 21 H 0.06 1.30 7.98 -51.93 -0.41 0.89 15 22 H 0.06 1.12 7.22 -51.93 -0.37 0.74 15 23 H 0.28 6.23 8.31 -40.82 -0.34 5.89 15 24 H 0.19 2.70 8.06 -52.48 -0.42 2.27 15 25 H 0.20 3.94 6.36 -52.49 -0.33 3.60 15 LS Contribution 226.06 15.07 3.41 3.41 Total: -1.00 -26.31 226.06 -5.32 -31.63 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -1.36 Total: 2.74 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -2.88 Total: 10.33 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.35 Total: -62.07 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.19 Total: 1.45 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.52 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -26.31 -5.32 -31.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053977.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.285 kcal (2) G-P(sol) polarization free energy of solvation -26.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds