Wall clock time and date at job start Mon Mar 30 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36895 * 120.00141 * 2 1 4 4 H 1.07996 * 120.00257 * 220.26962 * 3 2 1 5 5 C 1.38885 * 120.00157 * 40.26172 * 3 2 1 6 6 N 1.31503 * 119.99847 * 357.14397 * 5 3 2 7 7 Si 1.86800 * 120.00082 * 177.14002 * 5 3 2 8 8 H 1.48498 * 109.47250 * 90.00274 * 7 5 3 9 9 H 1.48503 * 109.46673 * 210.00303 * 7 5 3 10 10 H 1.48497 * 109.47100 * 330.00121 * 7 5 3 11 11 C 1.38037 * 119.99935 * 179.97438 * 2 1 3 12 12 N 1.33361 * 120.96401 * 6.03328 * 11 2 1 13 13 C 1.31915 * 120.90973 * 179.97438 * 12 11 2 14 14 N 1.31836 * 122.91944 * 0.04474 * 13 12 11 15 15 C 1.32540 * 120.66889 * 359.97354 * 14 13 12 16 16 O 1.34072 * 136.39074 * 179.97438 * 15 14 13 17 17 N 1.20995 * 112.96816 * 180.02562 * 16 15 14 18 18 C 1.30218 * 113.38920 * 359.97438 * 17 16 15 19 19 C 1.39762 * 120.96304 * 186.07162 * 11 2 1 20 20 H 1.08991 * 109.47002 * 273.90446 * 1 2 3 21 21 H 1.08994 * 109.46848 * 33.91397 * 1 2 3 22 22 H 1.09006 * 109.46773 * 153.90994 * 1 2 3 23 23 H 0.96996 * 120.00024 * 180.02562 * 6 5 3 24 24 H 1.08012 * 118.53961 * 180.02562 * 13 12 11 25 25 H 1.07997 * 127.35998 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1855 0.0000 4 1 3.0376 1.2964 -0.6045 5 6 1.7019 2.2459 0.7773 6 7 0.5899 2.1301 1.4696 7 14 2.6796 3.8364 0.8395 8 1 2.2094 4.7488 -0.2335 9 1 2.4857 4.4851 2.1612 10 1 4.1210 3.5395 0.6405 11 6 2.1552 -1.1954 0.0005 12 7 1.5134 -2.3583 -0.1191 13 6 2.1741 -3.5001 -0.1190 14 7 3.4855 -3.5690 -0.0022 15 6 4.2119 -2.4675 0.1223 16 8 5.5128 -2.1727 0.2576 17 7 5.7215 -0.9837 0.3396 18 6 4.6385 -0.2633 0.2773 19 6 3.5468 -1.2223 0.1273 20 1 -0.3633 0.0700 1.0252 21 1 -0.3633 0.8528 -0.5734 22 1 -0.3633 -0.9230 -0.4520 23 1 0.2771 2.8708 2.0122 24 1 1.6158 -4.4194 -0.2187 25 1 4.5636 0.8129 0.3266 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260053977.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:51 Heat of formation + Delta-G solvation = 100.927388 kcal Electronic energy + Delta-G solvation = -14703.119075 eV Core-core repulsion = 12106.206068 eV Total energy + Delta-G solvation = -2596.913007 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.43746 -41.03637 -38.36198 -34.73305 -34.22786 -33.24826 -31.50142 -28.66971 -27.30040 -24.90018 -24.67123 -22.67417 -20.56796 -18.87729 -18.66894 -18.59486 -18.05864 -16.71493 -15.89258 -15.70668 -15.28507 -14.96953 -14.68386 -14.44933 -13.46430 -13.09294 -12.92058 -12.75401 -12.61946 -12.24105 -12.13632 -11.57688 -11.16632 -10.91890 -10.62780 -10.02128 -9.05307 -8.53063 -6.27260 -0.03289 0.37096 1.29325 1.41154 1.46674 1.53857 1.55207 2.07530 2.58771 2.75162 3.09815 3.24484 3.60577 3.78291 3.93802 4.23647 4.47428 4.69620 4.89418 5.01993 5.17056 5.26547 5.44324 5.88714 6.03005 6.46834 6.94732 7.10681 7.34818 7.62192 8.43530 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.012223 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.785496 B = 2290.255608 C = 3083.852748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.385 5.385 3 C -0.350 4.350 4 H 0.106 0.894 5 C 0.015 3.985 6 N -0.874 5.874 7 Si 0.989 3.011 8 H -0.264 1.264 9 H -0.278 1.278 10 H -0.251 1.251 11 C 0.419 3.581 12 N -0.620 5.620 13 C 0.379 3.621 14 N -0.597 5.597 15 C 0.262 3.738 16 O 0.054 5.946 17 N -0.377 5.377 18 C 0.085 3.915 19 C -0.350 4.350 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.282 0.718 24 H 0.243 0.757 25 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 -1.086 -1.853 2.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.070 5.070 3 C -0.479 4.479 4 H 0.123 0.877 5 C -0.192 4.192 6 N -0.507 5.507 7 Si 0.811 3.189 8 H -0.189 1.189 9 H -0.203 1.203 10 H -0.175 1.175 11 C 0.168 3.832 12 N -0.353 5.353 13 C 0.088 3.912 14 N -0.336 5.336 15 C 0.075 3.925 16 O 0.009 5.991 17 N -0.094 5.094 18 C -0.101 4.101 19 C -0.366 4.366 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.259 0.741 25 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.037 -1.227 -1.658 2.309 hybrid contribution -0.228 1.580 0.212 1.611 sum 0.809 0.353 -1.446 1.695 Atomic orbital electron populations 1.21572 0.78734 1.00356 1.01655 1.42711 1.06192 1.01640 1.56500 1.20022 1.12824 0.87905 1.27155 0.87678 1.26489 0.96654 1.03032 0.93050 1.70025 1.20436 1.34148 1.26086 0.84973 0.79332 0.76387 0.78247 1.18930 1.20318 1.17487 1.18254 0.85906 0.87347 0.91650 1.68185 1.39679 0.97436 1.29984 1.25417 0.84722 0.96107 0.84921 1.67362 1.07565 1.27885 1.30804 1.21877 0.85972 0.91364 0.93330 1.84667 1.21718 1.19838 1.72845 1.73582 1.23825 0.88598 1.23428 1.25994 0.85695 1.01740 0.96715 1.20921 0.95974 0.95797 1.23909 0.92753 0.92516 0.91349 0.90768 0.74117 0.76946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.15 8.89 127.77 1.14 6.29 15 2 N -0.39 -18.00 3.04 -540.71 -1.65 -19.64 15 3 C -0.35 -16.13 7.65 84.06 0.64 -15.49 15 4 H 0.11 4.64 5.84 -2.91 -0.02 4.63 15 5 C 0.02 0.69 5.40 84.90 0.46 1.15 15 6 N -0.87 -41.36 11.12 21.66 0.24 -41.12 15 7 Si 0.99 34.98 29.55 68.60 2.03 37.01 15 8 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 9 H -0.28 -9.89 7.11 99.48 0.71 -9.18 15 10 H -0.25 -8.41 7.11 99.48 0.71 -7.70 15 11 C 0.42 19.24 7.36 133.25 0.98 20.22 15 12 N -0.62 -25.61 9.21 -197.49 -1.82 -27.43 15 13 C 0.38 13.51 12.22 180.84 2.21 15.72 15 14 N -0.60 -23.92 10.46 -313.45 -3.28 -27.20 15 15 C 0.26 11.42 8.82 85.31 0.75 12.17 15 16 O 0.05 2.31 11.11 71.24 0.79 3.10 15 17 N -0.38 -15.66 11.96 -53.18 -0.64 -16.29 15 18 C 0.09 3.54 10.93 86.97 0.95 4.49 15 19 C -0.35 -15.78 6.03 -20.16 -0.12 -15.91 15 20 H 0.05 2.50 7.21 -2.39 -0.02 2.48 15 21 H 0.06 2.43 7.98 -2.39 -0.02 2.41 15 22 H 0.07 2.70 7.22 -2.38 -0.02 2.68 15 23 H 0.28 12.53 8.31 -92.71 -0.77 11.76 15 24 H 0.24 5.82 8.06 -2.90 -0.02 5.80 15 25 H 0.21 8.11 6.36 -2.91 -0.02 8.09 15 Total: -1.00 -54.27 226.06 3.93 -50.34 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.24 Total: 12.59 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 7.01 Total: 28.65 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -7.14 Total: -131.68 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.79 Total: 3.10 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Total: -54.27 3.93 -50.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053977.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.265 kcal (2) G-P(sol) polarization free energy of solvation -54.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds