Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36961 * 120.00169 * 2 1 4 4 H 1.07994 * 119.99961 * 202.52640 * 3 2 1 5 5 C 1.38813 * 119.99556 * 22.51951 * 3 2 1 6 6 N 1.31550 * 120.00455 * 11.09393 * 5 3 2 7 7 Si 1.86805 * 119.99789 * 191.08550 * 5 3 2 8 8 H 1.48500 * 109.47016 * 90.00324 * 7 5 3 9 9 H 1.48500 * 109.47047 * 210.00543 * 7 5 3 10 10 H 1.48499 * 109.47207 * 330.00439 * 7 5 3 11 11 C 1.38435 * 120.00364 * 179.97438 * 2 1 3 12 12 N 1.32761 * 118.90117 * 179.97438 * 11 2 1 13 13 C 1.32143 * 121.15353 * 180.02562 * 12 11 2 14 14 C 1.39569 * 118.67938 * 0.02562 * 13 12 11 15 15 N 1.35803 * 134.89117 * 180.28954 * 14 13 12 16 16 C 1.29941 * 108.71728 * 180.08383 * 15 14 13 17 17 O 1.34400 * 110.31392 * 359.63315 * 16 15 14 18 18 C 1.34668 * 108.26094 * 0.22724 * 17 16 15 19 19 N 1.32420 * 134.88681 * 180.02562 * 18 17 16 20 20 H 1.09001 * 109.47190 * 273.86653 * 1 2 3 21 21 H 1.09008 * 109.47009 * 33.86499 * 1 2 3 22 22 H 1.08999 * 109.47241 * 153.85935 * 1 2 3 23 23 H 0.97001 * 120.00970 * 179.97438 * 6 5 3 24 24 H 1.07993 * 120.65901 * 179.97438 * 13 12 11 25 25 H 1.07995 * 124.84126 * 179.89029 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.1679 1.2217 -0.3583 5 6 1.5350 2.3424 0.4604 6 7 0.3852 2.2681 1.0952 7 14 2.3407 4.0041 0.1789 8 1 1.8742 4.5678 -1.1133 9 1 1.9724 4.9262 1.2831 10 1 3.8161 3.8392 0.1431 11 6 2.1572 -1.1988 0.0005 12 7 3.4845 -1.1733 0.0000 13 6 4.1898 -2.2908 0.0000 14 6 3.5118 -3.5107 0.0000 15 7 3.8871 -4.8159 0.0048 16 6 2.8196 -5.5567 0.0001 17 8 1.7176 -4.7873 0.0002 18 6 2.1038 -3.4972 0.0001 19 7 1.4729 -2.3329 0.0006 20 1 -0.3633 0.0693 1.0253 21 1 -0.3633 0.8534 -0.5727 22 1 -0.3633 -0.9225 -0.4528 23 1 -0.0443 3.0760 1.4173 24 1 5.2693 -2.2607 -0.0009 25 1 2.8181 -6.6367 0.0006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260106827.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = 74.310808 kcal Electronic energy + Delta-G solvation = -14340.863554 eV Core-core repulsion = 11742.796365 eV Total energy + Delta-G solvation = -2598.067189 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.09233 -40.92030 -37.90943 -35.68647 -34.22887 -33.83913 -30.47135 -28.66659 -26.55935 -25.53401 -23.50377 -22.93985 -20.51808 -19.21344 -18.58856 -18.01413 -17.84599 -16.79603 -16.01790 -15.77800 -15.54851 -15.18726 -14.42320 -14.16859 -13.42395 -13.18156 -12.88931 -12.72085 -12.57002 -12.52513 -12.09119 -11.55195 -11.37830 -11.19541 -10.54776 -9.88081 -9.00071 -8.48669 -5.96935 -0.13621 0.33952 1.16560 1.44392 1.45742 1.58559 1.67649 2.16230 2.56781 2.72511 3.15235 3.26990 3.49291 3.66766 3.96827 4.50391 4.57681 4.84751 4.94398 5.05812 5.17323 5.34368 5.48326 5.76935 6.16651 6.34867 6.67278 6.96213 7.14252 7.68479 8.49840 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.061550 B = 0.007794 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.807213 B = 3591.467935 C = 3988.554719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.140 3.860 2 N -0.388 5.388 3 C -0.317 4.317 4 H 0.108 0.892 5 C -0.007 4.007 6 N -0.887 5.887 7 Si 1.010 2.990 8 H -0.265 1.265 9 H -0.275 1.275 10 H -0.261 1.261 11 C 0.493 3.507 12 N -0.564 5.564 13 C 0.265 3.735 14 C -0.213 4.213 15 N -0.463 5.463 16 C 0.200 3.800 17 O -0.229 6.229 18 C 0.293 3.707 19 N -0.609 5.609 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.281 0.719 24 H 0.204 0.796 25 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -7.294 -2.016 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.079 5.079 3 C -0.446 4.446 4 H 0.126 0.874 5 C -0.211 4.211 6 N -0.521 5.521 7 Si 0.832 3.168 8 H -0.190 1.190 9 H -0.201 1.201 10 H -0.185 1.185 11 C 0.142 3.858 12 N -0.286 5.286 13 C 0.084 3.916 14 C -0.335 4.335 15 N -0.190 5.190 16 C -0.033 4.033 17 O -0.116 6.116 18 C 0.100 3.900 19 N -0.352 5.352 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.220 0.780 25 H 0.329 0.671 Dipole moment (debyes) X Y Z Total from point charges 3.006 -6.117 -1.906 7.077 hybrid contribution -0.382 0.048 0.108 0.400 sum 2.625 -6.069 -1.797 6.852 Atomic orbital electron populations 1.21383 0.77689 0.99785 1.01466 1.42688 1.06045 1.00901 1.58258 1.20205 1.00439 0.83123 1.40862 0.87386 1.26481 0.96911 1.03826 0.93880 1.70183 1.17373 1.31485 1.33099 0.84664 0.78813 0.75053 0.78297 1.19039 1.20053 1.18499 1.19063 0.85151 0.85089 0.96542 1.68058 1.06724 1.30455 1.23320 1.22750 1.01038 0.82863 0.84977 1.20865 0.93660 0.94650 1.24284 1.70157 1.30992 1.00139 1.17730 1.29372 0.75325 1.00037 0.98608 1.84353 1.38429 1.12960 1.75862 1.20119 0.90447 0.85080 0.94321 1.66247 1.40980 0.94562 1.33444 0.93221 0.91627 0.92578 0.90933 0.77981 0.67119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.86 8.72 127.77 1.11 7.97 15 2 N -0.39 -20.52 3.11 -547.57 -1.70 -22.22 15 3 C -0.32 -16.69 9.28 84.03 0.78 -15.91 15 4 H 0.11 5.67 7.30 -2.91 -0.02 5.65 15 5 C -0.01 -0.33 5.13 84.87 0.44 0.11 15 6 N -0.89 -45.26 10.58 21.65 0.23 -45.03 15 7 Si 1.01 38.88 29.57 68.60 2.03 40.91 15 8 H -0.27 -9.81 7.11 99.48 0.71 -9.11 15 9 H -0.28 -10.31 7.11 99.48 0.71 -9.60 15 10 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 11 C 0.49 25.32 8.13 261.37 2.12 27.44 15 12 N -0.56 -26.72 9.17 -197.13 -1.81 -28.53 15 13 C 0.26 10.44 11.37 84.97 0.97 11.41 15 14 C -0.21 -8.48 7.30 39.48 0.29 -8.19 15 15 N -0.46 -15.24 11.33 -307.97 -3.49 -18.73 15 16 C 0.20 5.13 13.13 130.52 1.71 6.84 15 17 O -0.23 -8.06 10.75 -7.03 -0.08 -8.13 15 18 C 0.29 12.78 8.66 85.23 0.74 13.52 15 19 N -0.61 -30.13 9.04 -310.99 -2.81 -32.94 15 20 H 0.05 2.54 7.44 -2.39 -0.02 2.53 15 21 H 0.07 3.18 7.17 -2.38 -0.02 3.17 15 22 H 0.06 2.60 7.19 -2.39 -0.02 2.58 15 23 H 0.28 13.30 8.31 -92.71 -0.77 12.52 15 24 H 0.20 6.08 8.06 -2.91 -0.02 6.06 15 25 H 0.31 3.09 8.06 -2.91 -0.02 3.06 15 Total: -1.00 -65.53 230.13 1.76 -63.77 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.23 Total: 7.72 kcal Atomic # 6 Polarization: 35.02 SS G_CDS: 8.16 Total: 43.18 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -9.58 Total: -147.45 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.08 Total: -8.13 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -65.53 1.76 -63.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260106827.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.084 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds