Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00198 * 2 1 4 4 H 1.48498 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46942 * 299.99484 * 3 2 1 6 6 H 1.48500 * 109.47261 * 59.99578 * 3 2 1 7 7 C 1.37876 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00648 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99568 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46699 * 179.97438 * 9 7 2 11 11 C 1.36081 * 126.34785 * 265.02143 * 10 9 7 12 12 N 1.30084 * 110.08991 * 179.74949 * 11 10 9 13 13 C 1.35816 * 109.63180 * 0.38476 * 12 11 10 14 14 C 1.38076 * 126.34210 * 85.00378 * 10 9 7 15 15 C 1.38828 * 134.05312 * 359.97438 * 14 10 9 16 16 C 1.37849 * 119.87857 * 180.02562 * 15 14 10 17 17 C 1.38747 * 120.48020 * 359.97438 * 16 15 14 18 18 C 1.37844 * 120.49189 * 0.02562 * 17 16 15 19 19 F 1.35092 * 120.13556 * 180.02562 * 18 17 16 20 20 H 0.97004 * 120.00097 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47209 * 60.00026 * 9 7 2 22 22 H 1.09000 * 109.47030 * 299.99156 * 9 7 2 23 23 H 1.07998 * 124.95842 * 359.97438 * 11 10 9 24 24 H 1.08004 * 120.05745 * 0.02562 * 15 14 10 25 25 H 1.07995 * 119.76053 * 179.97438 * 16 15 14 26 26 H 1.07996 * 119.75069 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6549 -4.2875 -1.0914 12 7 3.4945 -5.2126 -0.7290 13 6 3.6322 -5.2001 0.6221 14 6 2.8084 -4.1716 1.1085 15 6 2.7488 -3.9178 2.4721 16 6 3.4985 -4.6766 3.3452 17 6 4.3137 -5.6946 2.8717 18 6 4.3862 -5.9617 1.5214 19 9 5.1819 -6.9550 1.0682 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8904 23 1 2.3621 -4.0823 -2.1105 24 1 2.1162 -3.1273 2.8480 25 1 3.4510 -4.4772 4.4056 26 1 4.8963 -6.2815 3.5663 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260109205.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = 16.797007 kcal Electronic energy + Delta-G solvation = -14075.740133 eV Core-core repulsion = 11455.258997 eV Total energy + Delta-G solvation = -2620.481136 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.39676 -41.47320 -36.69403 -34.21220 -32.36396 -29.59613 -28.87855 -27.33270 -23.53711 -22.76815 -21.82252 -20.00006 -17.16152 -16.96515 -16.66261 -15.79751 -15.35370 -14.99926 -14.65667 -14.31731 -14.12208 -13.17181 -12.66891 -12.54729 -12.00788 -11.62653 -11.40825 -11.24086 -11.05453 -10.98767 -10.42869 -10.23069 -9.55942 -9.32852 -8.80042 -7.97542 -7.46056 -6.42098 -4.51801 1.27738 1.85654 3.10757 3.19277 3.22904 3.35012 3.52931 4.12898 4.17565 4.54593 4.74084 4.92729 5.16112 5.38695 5.63025 5.70715 5.90797 6.01125 6.37733 6.43436 6.72272 6.78246 6.87445 7.18219 7.26570 7.50269 7.68678 7.84005 8.37498 8.55925 9.17308 10.65305 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.040979 B = 0.007837 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.116746 B = 3572.160759 C = 3815.365238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.236 3.764 10 N -0.457 5.457 11 C 0.264 3.736 12 N -0.512 5.512 13 C 0.003 3.997 14 C 0.080 3.920 15 C -0.100 4.100 16 C -0.097 4.097 17 C -0.173 4.173 18 C 0.138 3.862 19 F -0.139 7.139 20 H 0.269 0.731 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.210 0.790 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 -6.067 3.976 8.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.118 3.882 10 N -0.140 5.140 11 C -0.022 4.022 12 N -0.232 5.232 13 C -0.118 4.118 14 C -0.034 4.034 15 C -0.121 4.121 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.117 3.883 19 F -0.118 7.118 20 H 0.079 0.921 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.226 0.774 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.608 -6.389 3.383 8.079 hybrid contribution 0.030 1.466 0.284 1.494 sum 3.637 -4.923 3.667 7.135 Atomic orbital electron populations 1.69917 1.06105 1.27858 1.48654 1.24935 0.94960 0.99617 0.94054 0.86294 0.80090 0.82336 0.77994 1.19473 1.20517 1.20517 1.21344 0.93812 0.89621 1.53708 0.91563 1.19828 0.86775 0.81495 1.00149 1.46271 1.35492 1.27929 1.04344 1.25261 0.93217 0.89558 0.94206 1.70447 1.19904 1.22966 1.09879 1.18919 1.02162 0.99311 0.91401 1.18675 0.98157 0.96305 0.90255 1.20129 1.01602 1.01061 0.89279 1.20549 0.96700 0.95263 0.99265 1.20682 1.04184 1.01991 0.92539 1.16739 0.92716 0.87904 0.90891 1.91437 1.71532 1.58851 1.89962 0.92110 0.92698 0.93274 0.77356 0.85136 0.84945 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.29 55.43 0.74 -22.88 15 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 15 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.55 -13.96 9.39 -34.44 -0.32 -14.28 15 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 15 9 C 0.24 5.44 5.91 -5.19 -0.03 5.41 15 10 N -0.46 -9.67 2.79 -117.07 -0.33 -10.00 15 11 C 0.26 5.12 12.50 -89.76 -1.12 4.00 15 12 N -0.51 -10.76 11.27 -12.01 -0.14 -10.90 15 13 C 0.00 0.07 7.21 -84.64 -0.61 -0.54 15 14 C 0.08 1.65 6.87 -83.99 -0.58 1.07 15 15 C -0.10 -1.79 10.04 -39.51 -0.40 -2.19 15 16 C -0.10 -1.44 10.02 -39.54 -0.40 -1.84 15 17 C -0.17 -2.62 9.99 -39.54 -0.40 -3.02 15 18 C 0.14 2.56 7.34 -39.10 -0.29 2.27 15 19 F -0.14 -2.57 17.27 2.25 0.04 -2.53 15 20 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 21 H 0.06 1.27 8.13 -51.93 -0.42 0.84 15 22 H 0.05 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.21 3.21 8.06 -52.49 -0.42 2.78 15 24 H 0.13 2.27 8.06 -52.48 -0.42 1.85 15 25 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 26 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 LS Contribution 244.84 15.07 3.69 3.69 Total: -1.00 -28.53 244.84 -7.33 -35.87 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -2.08 Total: -0.83 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -4.24 Total: -7.45 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.27 Total: -43.78 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.53 -7.33 -35.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109205.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.662 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds