Wall clock time and date at job start Mon Mar 30 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00198 * 2 1 4 4 H 1.48498 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46942 * 299.99484 * 3 2 1 6 6 H 1.48500 * 109.47261 * 59.99578 * 3 2 1 7 7 C 1.37876 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00648 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99568 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46699 * 179.97438 * 9 7 2 11 11 C 1.36081 * 126.34785 * 265.02143 * 10 9 7 12 12 N 1.30084 * 110.08991 * 179.74949 * 11 10 9 13 13 C 1.35816 * 109.63180 * 0.38476 * 12 11 10 14 14 C 1.38076 * 126.34210 * 85.00378 * 10 9 7 15 15 C 1.38828 * 134.05312 * 359.97438 * 14 10 9 16 16 C 1.37849 * 119.87857 * 180.02562 * 15 14 10 17 17 C 1.38747 * 120.48020 * 359.97438 * 16 15 14 18 18 C 1.37844 * 120.49189 * 0.02562 * 17 16 15 19 19 F 1.35092 * 120.13556 * 180.02562 * 18 17 16 20 20 H 0.97004 * 120.00097 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47209 * 60.00026 * 9 7 2 22 22 H 1.09000 * 109.47030 * 299.99156 * 9 7 2 23 23 H 1.07998 * 124.95842 * 359.97438 * 11 10 9 24 24 H 1.08004 * 120.05745 * 0.02562 * 15 14 10 25 25 H 1.07995 * 119.76053 * 179.97438 * 16 15 14 26 26 H 1.07996 * 119.75069 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6549 -4.2875 -1.0914 12 7 3.4945 -5.2126 -0.7290 13 6 3.6322 -5.2001 0.6221 14 6 2.8084 -4.1716 1.1085 15 6 2.7488 -3.9178 2.4721 16 6 3.4985 -4.6766 3.3452 17 6 4.3137 -5.6946 2.8717 18 6 4.3862 -5.9617 1.5214 19 9 5.1819 -6.9550 1.0682 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8904 23 1 2.3621 -4.0823 -2.1105 24 1 2.1162 -3.1273 2.8480 25 1 3.4510 -4.4772 4.4056 26 1 4.8963 -6.2815 3.5663 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260109205.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:21 Heat of formation + Delta-G solvation = 2.010224 kcal Electronic energy + Delta-G solvation = -14076.381336 eV Core-core repulsion = 11455.258997 eV Total energy + Delta-G solvation = -2621.122339 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.80051 -42.96908 -38.06200 -35.98440 -34.15083 -31.04291 -30.28488 -29.11602 -25.35792 -24.18375 -23.25399 -21.52057 -18.91930 -18.49866 -18.30378 -17.12775 -16.83401 -16.67008 -16.15258 -15.82851 -15.67513 -14.65122 -14.35926 -14.04515 -13.75270 -13.23456 -12.88481 -12.73280 -12.65366 -12.48823 -12.27317 -11.98854 -11.13141 -11.00884 -10.74640 -9.41418 -8.92784 -8.36472 -6.54178 -0.11880 0.48841 1.36468 1.39735 1.50518 1.82746 1.97889 2.33579 2.73228 2.95042 3.19147 3.31555 3.85321 4.05962 4.25494 4.31358 4.43382 4.73452 4.85026 4.89887 5.16617 5.38285 5.43648 5.51918 5.63226 5.76817 5.90437 6.23028 6.58451 6.86168 7.18698 8.69647 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.040979 B = 0.007837 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.116746 B = 3572.160759 C = 3815.365238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.252 3.748 10 N -0.470 5.470 11 C 0.260 3.740 12 N -0.534 5.534 13 C -0.025 4.025 14 C 0.054 3.946 15 C -0.121 4.121 16 C -0.073 4.073 17 C -0.150 4.150 18 C 0.114 3.886 19 F -0.144 7.144 20 H 0.274 0.726 21 H 0.051 0.949 22 H 0.035 0.965 23 H 0.240 0.760 24 H 0.129 0.871 25 H 0.180 0.820 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 -5.945 5.483 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.133 3.867 10 N -0.156 5.156 11 C -0.026 4.026 12 N -0.255 5.255 13 C -0.146 4.146 14 C -0.058 4.058 15 C -0.141 4.141 16 C -0.093 4.093 17 C -0.171 4.171 18 C 0.093 3.907 19 F -0.122 7.122 20 H 0.083 0.917 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.256 0.744 24 H 0.147 0.853 25 H 0.198 0.802 26 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.440 -6.292 4.901 9.128 hybrid contribution -0.190 1.349 -0.098 1.366 sum 4.250 -4.943 4.804 8.097 Atomic orbital electron populations 1.69987 1.07216 1.28854 1.49215 1.25644 0.95674 1.02481 0.93552 0.85368 0.78468 0.78694 0.78340 1.19920 1.19790 1.19763 1.21467 0.93181 0.91038 1.53905 0.93102 1.19429 0.86710 0.81472 0.99100 1.46161 1.36011 1.28066 1.05318 1.25874 0.92682 0.88940 0.95105 1.70420 1.20725 1.23739 1.10576 1.19322 1.03287 1.00328 0.91613 1.19122 0.98734 0.96781 0.91204 1.20419 1.02851 1.02141 0.88725 1.21096 0.94003 0.93159 1.00995 1.21198 1.02986 1.01288 0.91591 1.17129 0.93278 0.88278 0.91971 1.91420 1.71623 1.58970 1.90221 0.91712 0.93109 0.94734 0.74437 0.85274 0.80248 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.63 13.29 21.45 0.28 -48.35 15 2 C 0.03 1.44 5.46 84.66 0.46 1.91 15 3 Si 0.97 40.79 29.54 68.60 2.03 42.82 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 7 C -0.56 -28.79 9.39 25.60 0.24 -28.55 15 8 H 0.05 2.74 7.81 -2.91 -0.02 2.71 15 9 C 0.25 11.90 5.91 85.63 0.51 12.40 15 10 N -0.47 -20.32 2.79 -524.31 -1.46 -21.78 15 11 C 0.26 10.25 12.50 180.05 2.25 12.50 15 12 N -0.53 -22.77 11.27 -191.90 -2.16 -24.93 15 13 C -0.03 -1.05 7.21 39.47 0.28 -0.77 15 14 C 0.05 2.23 6.87 38.84 0.27 2.50 15 15 C -0.12 -4.17 10.04 22.32 0.22 -3.94 15 16 C -0.07 -1.89 10.02 22.30 0.22 -1.66 15 17 C -0.15 -4.01 9.99 22.30 0.22 -3.79 15 18 C 0.11 4.07 7.34 22.58 0.17 4.24 15 19 F -0.14 -5.16 17.27 44.97 0.78 -4.38 15 20 H 0.27 13.64 8.31 -92.71 -0.77 12.87 15 21 H 0.05 2.40 8.13 -2.39 -0.02 2.38 15 22 H 0.03 1.71 8.14 -2.39 -0.02 1.69 15 23 H 0.24 7.35 8.06 -2.91 -0.02 7.32 15 24 H 0.13 4.43 8.06 -2.91 -0.02 4.40 15 25 H 0.18 2.98 8.06 -2.91 -0.02 2.95 15 26 H 0.18 3.22 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -61.59 244.84 5.50 -56.09 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.19 Total: 5.71 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 4.85 Total: -5.18 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.34 Total: -95.06 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -61.59 5.50 -56.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109205.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.100 kcal (2) G-P(sol) polarization free energy of solvation -61.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds