Wall clock time and date at job start Mon Mar 30 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39395 * 126.63841 * 2 1 4 4 C 1.41288 * 126.16040 * 359.96133 * 3 2 1 5 5 H 1.07991 * 120.00050 * 6.16719 * 4 3 2 6 6 C 1.39684 * 119.99717 * 186.16553 * 4 3 2 7 7 N 1.31004 * 120.00451 * 6.45372 * 6 4 3 8 8 Si 1.86803 * 119.99838 * 186.46043 * 6 4 3 9 9 H 1.48498 * 109.46911 * 265.01517 * 8 6 4 10 10 H 1.48500 * 109.47172 * 25.01192 * 8 6 4 11 11 H 1.48504 * 109.47099 * 145.01435 * 8 6 4 12 12 N 1.34787 * 107.67809 * 180.21983 * 3 2 1 13 13 C 1.32521 * 109.19205 * 359.60438 * 12 3 2 14 14 C 1.40949 * 131.62169 * 180.09056 * 13 12 3 15 15 C 1.36147 * 119.47603 * 180.33664 * 14 13 12 16 16 C 1.40301 * 119.77400 * 0.02562 * 15 14 13 17 17 C 1.35366 * 120.24902 * 0.02562 * 16 15 14 18 18 F 1.35108 * 119.70855 * 180.02562 * 17 16 15 19 19 N 1.36312 * 126.64329 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47351 * 90.02717 * 1 2 3 21 21 H 1.09007 * 109.47070 * 210.02025 * 1 2 3 22 22 H 1.08996 * 109.47290 * 330.02301 * 1 2 3 23 23 H 0.96995 * 120.00306 * 179.97438 * 7 6 4 24 24 H 1.08001 * 120.26221 * 0.36002 * 14 13 12 25 25 H 1.07999 * 120.11612 * 179.97438 * 15 14 13 26 26 H 1.07990 * 119.87315 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3388 1.1185 0.0000 4 6 1.9210 2.4682 -0.0008 5 1 0.8731 2.7091 0.0990 6 6 2.8635 3.4910 -0.1306 7 7 4.1165 3.1996 -0.3780 8 14 2.3372 5.2743 0.0488 9 1 2.0562 5.8448 -1.2931 10 1 1.1116 5.3471 0.8842 11 1 3.4255 6.0487 0.6980 12 7 3.6136 0.6806 -0.0049 13 6 3.6190 -0.6446 0.0007 14 6 4.6764 -1.5765 0.0007 15 6 4.3954 -2.9087 0.0004 16 6 3.0600 -3.3390 -0.0004 17 6 2.0523 -2.4351 -0.0015 18 9 0.7703 -2.8616 -0.0017 19 7 2.3205 -1.0937 0.0005 20 1 -0.3634 -0.0005 -1.0277 21 1 -0.3633 -0.8899 0.5142 22 1 -0.3634 0.8901 0.5135 23 1 4.7709 3.9098 -0.4686 24 1 5.7015 -1.2365 0.0012 25 1 5.1976 -3.6317 0.0000 26 1 2.8352 -4.3952 -0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110784.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:36 Heat of formation + Delta-G solvation = 33.634324 kcal Electronic energy + Delta-G solvation = -14408.606014 eV Core-core repulsion = 11788.854999 eV Total energy + Delta-G solvation = -2619.751015 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.65432 -41.12769 -36.22834 -33.49089 -32.35960 -30.31347 -28.90328 -26.56430 -24.93423 -22.07260 -21.44785 -19.96230 -17.27089 -16.89225 -16.08787 -15.87598 -15.46859 -14.73107 -14.40614 -13.92400 -13.56103 -12.79453 -12.38710 -12.11654 -12.05123 -11.56083 -11.33567 -11.19010 -10.93061 -10.57771 -10.51389 -10.19226 -9.92048 -9.21259 -8.40797 -7.64387 -6.62702 -6.55247 -4.37715 1.49224 2.19636 3.02527 3.10770 3.14858 3.34840 3.94197 3.97752 4.54227 4.80924 5.29088 5.45974 5.47338 5.69728 5.85183 6.16126 6.32507 6.45538 6.49080 6.57056 6.69626 6.89010 7.09796 7.21024 7.39570 7.64315 8.03408 8.33478 8.68087 8.88274 9.58399 10.33966 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.043744 B = 0.009391 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.934995 B = 2980.983413 C = 3599.172882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.225 4.225 3 C 0.247 3.753 4 C -0.429 4.429 5 H 0.088 0.912 6 C 0.072 3.928 7 N -0.747 5.747 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.261 1.261 11 H -0.276 1.276 12 N -0.465 5.465 13 C 0.221 3.779 14 C -0.103 4.103 15 C -0.114 4.114 16 C -0.210 4.210 17 C 0.246 3.754 18 F -0.128 7.128 19 N -0.360 5.360 20 H 0.043 0.957 21 H 0.041 0.959 22 H 0.068 0.932 23 H 0.276 0.724 24 H 0.139 0.861 25 H 0.131 0.869 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 -6.361 0.533 6.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.335 4.335 3 C 0.122 3.878 4 C -0.461 4.461 5 H 0.106 0.894 6 C -0.151 4.151 7 N -0.370 5.370 8 Si 0.736 3.264 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.201 1.201 12 N -0.189 5.189 13 C -0.019 4.019 14 C -0.125 4.125 15 C -0.137 4.137 16 C -0.235 4.235 17 C 0.120 3.880 18 F -0.107 7.107 19 N -0.040 5.040 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.157 0.843 25 H 0.149 0.851 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.570 -5.649 0.487 5.698 hybrid contribution -1.150 0.109 0.036 1.156 sum -1.720 -5.540 0.523 5.824 Atomic orbital electron populations 1.19666 0.88471 1.00930 1.00125 1.21343 0.93169 0.84648 1.34367 1.18272 0.85740 0.92104 0.91660 1.18761 0.94893 0.87655 1.44793 0.89436 1.25938 0.94542 1.01387 0.93227 1.70066 1.02032 1.34390 1.30491 0.86242 0.79446 0.81484 0.79200 1.19573 1.18499 1.20117 1.71697 1.21559 1.01262 1.24377 1.21533 0.81623 0.92277 1.06425 1.20070 0.97332 0.90774 1.04329 1.20394 0.94961 0.95113 1.03249 1.19983 0.91378 0.98118 1.13995 1.17339 0.79292 0.82990 1.08349 1.91510 1.36233 1.88551 1.94405 1.42950 1.10751 1.03021 1.47258 0.93795 0.94052 0.91328 0.91361 0.84305 0.85129 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.71 9.80 36.00 0.35 -0.36 15 2 C -0.23 -5.72 7.16 -80.17 -0.57 -6.29 15 3 C 0.25 6.93 6.63 -84.98 -0.56 6.37 15 4 C -0.43 -11.61 9.11 -37.88 -0.35 -11.96 15 5 H 0.09 2.19 7.27 -52.49 -0.38 1.81 15 6 C 0.07 1.86 5.48 -17.36 -0.10 1.76 15 7 N -0.75 -20.42 11.99 55.53 0.67 -19.76 15 8 Si 0.91 18.86 29.56 -169.99 -5.03 13.84 15 9 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 10 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 11 H -0.28 -5.62 7.11 56.52 0.40 -5.21 15 12 N -0.47 -13.23 9.60 -10.33 -0.10 -13.33 15 13 C 0.22 5.51 7.77 -155.77 -1.21 4.30 15 14 C -0.10 -2.05 10.10 -39.31 -0.40 -2.45 15 15 C -0.11 -1.88 10.06 -39.56 -0.40 -2.28 15 16 C -0.21 -3.57 9.95 -39.83 -0.40 -3.97 15 17 C 0.25 5.03 8.23 -16.36 -0.13 4.90 15 18 F -0.13 -2.46 15.64 2.25 0.04 -2.43 15 19 N -0.36 -8.68 2.94 -57.72 -0.17 -8.85 15 20 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.04 0.80 6.94 -51.92 -0.36 0.44 15 22 H 0.07 1.37 7.52 -51.93 -0.39 0.98 15 23 H 0.28 6.82 8.30 -40.82 -0.34 6.49 15 24 H 0.14 2.49 8.06 -52.49 -0.42 2.07 15 25 H 0.13 1.62 8.06 -52.49 -0.42 1.19 15 26 H 0.14 1.87 8.06 -52.49 -0.42 1.45 15 LS Contribution 237.69 15.07 3.58 3.58 Total: -1.00 -30.48 237.69 -6.73 -37.21 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -1.96 Total: -0.30 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -3.76 Total: -9.97 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.40 Total: -41.94 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.48 -6.73 -37.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110784.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.846 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds