Wall clock time and date at job start Mon Mar 30 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39395 * 126.63841 * 2 1 4 4 C 1.41288 * 126.16040 * 359.96133 * 3 2 1 5 5 H 1.07991 * 120.00050 * 6.16719 * 4 3 2 6 6 C 1.39684 * 119.99717 * 186.16553 * 4 3 2 7 7 N 1.31004 * 120.00451 * 6.45372 * 6 4 3 8 8 Si 1.86803 * 119.99838 * 186.46043 * 6 4 3 9 9 H 1.48498 * 109.46911 * 265.01517 * 8 6 4 10 10 H 1.48500 * 109.47172 * 25.01192 * 8 6 4 11 11 H 1.48504 * 109.47099 * 145.01435 * 8 6 4 12 12 N 1.34787 * 107.67809 * 180.21983 * 3 2 1 13 13 C 1.32521 * 109.19205 * 359.60438 * 12 3 2 14 14 C 1.40949 * 131.62169 * 180.09056 * 13 12 3 15 15 C 1.36147 * 119.47603 * 180.33664 * 14 13 12 16 16 C 1.40301 * 119.77400 * 0.02562 * 15 14 13 17 17 C 1.35366 * 120.24902 * 0.02562 * 16 15 14 18 18 F 1.35108 * 119.70855 * 180.02562 * 17 16 15 19 19 N 1.36312 * 126.64329 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47351 * 90.02717 * 1 2 3 21 21 H 1.09007 * 109.47070 * 210.02025 * 1 2 3 22 22 H 1.08996 * 109.47290 * 330.02301 * 1 2 3 23 23 H 0.96995 * 120.00306 * 179.97438 * 7 6 4 24 24 H 1.08001 * 120.26221 * 0.36002 * 14 13 12 25 25 H 1.07999 * 120.11612 * 179.97438 * 15 14 13 26 26 H 1.07990 * 119.87315 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3388 1.1185 0.0000 4 6 1.9210 2.4682 -0.0008 5 1 0.8731 2.7091 0.0990 6 6 2.8635 3.4910 -0.1306 7 7 4.1165 3.1996 -0.3780 8 14 2.3372 5.2743 0.0488 9 1 2.0562 5.8448 -1.2931 10 1 1.1116 5.3471 0.8842 11 1 3.4255 6.0487 0.6980 12 7 3.6136 0.6806 -0.0049 13 6 3.6190 -0.6446 0.0007 14 6 4.6764 -1.5765 0.0007 15 6 4.3954 -2.9087 0.0004 16 6 3.0600 -3.3390 -0.0004 17 6 2.0523 -2.4351 -0.0015 18 9 0.7703 -2.8616 -0.0017 19 7 2.3205 -1.0937 0.0005 20 1 -0.3634 -0.0005 -1.0277 21 1 -0.3633 -0.8899 0.5142 22 1 -0.3634 0.8901 0.5135 23 1 4.7709 3.9098 -0.4686 24 1 5.7015 -1.2365 0.0012 25 1 5.1976 -3.6317 0.0000 26 1 2.8352 -4.3952 -0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110784.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:36 Heat of formation + Delta-G solvation = 15.322824 kcal Electronic energy + Delta-G solvation = -14409.400061 eV Core-core repulsion = 11788.854999 eV Total energy + Delta-G solvation = -2620.545061 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.20281 -42.88104 -37.88184 -35.30374 -34.13103 -32.05355 -30.55231 -28.40671 -26.61826 -23.74772 -23.18094 -21.73181 -19.10646 -18.48365 -17.76727 -17.51733 -17.18544 -16.35706 -15.97129 -15.64116 -15.18197 -14.51913 -14.05947 -13.77055 -13.60958 -13.22624 -13.00936 -12.75063 -12.54775 -12.41485 -12.16292 -11.88726 -11.58243 -11.02849 -10.30382 -9.45005 -8.45974 -8.33067 -6.34853 -0.07590 0.58762 1.39788 1.41141 1.56324 1.70525 2.18312 2.26266 2.78771 3.23862 3.52683 3.76684 3.93069 4.18011 4.32488 4.49493 4.74524 4.79536 4.92393 5.06825 5.08410 5.26398 5.36999 5.54995 5.63286 5.90945 6.17596 6.53374 6.81107 6.97177 7.72315 8.51366 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.043744 B = 0.009391 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.934995 B = 2980.983413 C = 3599.172882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.254 4.254 3 C 0.208 3.792 4 C -0.471 4.471 5 H 0.092 0.908 6 C 0.025 3.975 7 N -0.797 5.797 8 Si 0.993 3.007 9 H -0.262 1.262 10 H -0.254 1.254 11 H -0.270 1.270 12 N -0.519 5.519 13 C 0.197 3.803 14 C -0.122 4.122 15 C -0.076 4.076 16 C -0.178 4.178 17 C 0.221 3.779 18 F -0.123 7.123 19 N -0.374 5.374 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.279 0.721 24 H 0.154 0.846 25 H 0.191 0.809 26 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 -8.867 0.677 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.363 4.363 3 C 0.083 3.917 4 C -0.504 4.504 5 H 0.110 0.890 6 C -0.193 4.193 7 N -0.421 5.421 8 Si 0.813 3.187 9 H -0.187 1.187 10 H -0.177 1.177 11 H -0.195 1.195 12 N -0.244 5.244 13 C -0.043 4.043 14 C -0.144 4.144 15 C -0.099 4.099 16 C -0.202 4.202 17 C 0.098 3.902 18 F -0.102 7.102 19 N -0.054 5.054 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.171 0.829 25 H 0.208 0.792 26 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.383 -8.214 0.631 8.247 hybrid contribution -1.122 0.416 -0.009 1.197 sum -1.505 -7.798 0.621 7.966 Atomic orbital electron populations 1.19646 0.86242 1.01635 1.00692 1.21768 0.94709 0.84774 1.35066 1.18755 0.86590 0.93445 0.92950 1.19090 0.95542 0.88470 1.47282 0.89004 1.26915 0.94231 1.06030 0.92091 1.70191 1.03392 1.35901 1.32666 0.85048 0.79124 0.75121 0.79437 1.18695 1.17711 1.19510 1.71539 1.22425 1.03638 1.26810 1.22218 0.83249 0.92307 1.06525 1.20521 0.96938 0.91711 1.05252 1.21119 0.96359 0.94416 0.98001 1.20826 0.90561 0.99944 1.08820 1.18049 0.80600 0.82201 1.09383 1.91524 1.36073 1.88161 1.94474 1.43039 1.10258 1.04221 1.47896 0.93174 0.92730 0.91071 0.91110 0.82881 0.79156 0.79097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.04 9.80 71.24 0.70 -0.34 15 2 C -0.25 -13.34 7.16 42.14 0.30 -13.04 15 3 C 0.21 12.33 6.63 39.72 0.26 12.59 15 4 C -0.47 -27.02 9.11 23.37 0.21 -26.80 15 5 H 0.09 4.88 7.27 -2.92 -0.02 4.86 15 6 C 0.02 1.34 5.48 85.17 0.47 1.81 15 7 N -0.80 -46.04 11.99 21.79 0.26 -45.78 15 8 Si 0.99 40.25 29.56 68.60 2.03 42.28 15 9 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 10 H -0.25 -9.80 7.11 99.48 0.71 -9.10 15 11 H -0.27 -10.54 7.11 99.48 0.71 -9.84 15 12 N -0.52 -31.03 9.60 -186.60 -1.79 -32.82 15 13 C 0.20 9.97 7.77 134.02 1.04 11.01 15 14 C -0.12 -4.61 10.10 22.45 0.23 -4.39 15 15 C -0.08 -2.07 10.06 22.29 0.22 -1.84 15 16 C -0.18 -5.04 9.95 22.11 0.22 -4.82 15 17 C 0.22 8.48 8.23 83.26 0.69 9.16 15 18 F -0.12 -4.44 15.64 44.97 0.70 -3.73 15 19 N -0.37 -18.06 2.94 -336.52 -0.99 -19.05 15 20 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.05 2.11 6.94 -2.38 -0.02 2.10 15 22 H 0.07 2.93 7.52 -2.39 -0.02 2.91 15 23 H 0.28 14.57 8.30 -92.71 -0.77 13.80 15 24 H 0.15 5.22 8.06 -2.91 -0.02 5.20 15 25 H 0.19 3.07 8.06 -2.91 -0.02 3.04 15 26 H 0.19 3.56 8.06 -2.92 -0.02 3.53 15 Total: -1.00 -72.43 237.69 5.76 -66.67 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.21 Total: 9.08 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.34 Total: -16.64 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -2.52 Total: -97.65 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.70 Total: -3.73 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -72.43 5.76 -66.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110784.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.995 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds