Wall clock time and date at job start Mon Mar 30 2020 02:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29943 * 124.84658 * 2 1 4 4 C 1.35797 * 108.71893 * 180.02562 * 3 2 1 5 5 C 1.39564 * 134.89294 * 179.97438 * 4 3 2 6 6 N 1.32146 * 118.67869 * 179.78397 * 5 4 3 7 7 C 1.32766 * 121.15545 * 0.51849 * 6 5 4 8 8 N 1.38435 * 118.89632 * 179.72700 * 7 6 5 9 9 C 1.36951 * 120.00166 * 359.73168 * 8 7 6 10 10 H 1.07999 * 120.00180 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99962 * 180.02562 * 9 8 7 12 12 N 1.31562 * 119.99595 * 359.71826 * 11 9 8 13 13 Si 1.86795 * 120.00115 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47163 * 59.99668 * 13 11 9 15 15 H 1.48505 * 109.47234 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47124 * 299.99692 * 13 11 9 17 17 N 1.32448 * 122.20064 * 359.44462 * 7 6 5 18 18 C 1.32424 * 120.44236 * 0.28402 * 17 7 6 19 19 O 1.34403 * 124.84268 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47732 * 89.99462 * 1 2 3 21 21 H 1.09000 * 109.47258 * 209.99785 * 1 2 3 22 22 H 1.08998 * 109.47059 * 329.98850 * 1 2 3 23 23 H 1.08004 * 120.66413 * 0.02562 * 5 4 3 24 24 H 0.96999 * 119.99649 * 179.72912 * 8 7 6 25 25 H 0.97000 * 119.99375 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0664 0.0000 4 6 3.5539 0.6892 -0.0006 5 6 4.7748 1.3654 -0.0013 6 7 5.8913 0.6585 0.0027 7 6 5.8639 -0.6689 -0.0031 8 7 7.0618 -1.3628 -0.0043 9 6 8.2488 -0.6797 -0.0053 10 1 8.2504 0.4003 -0.0055 11 6 9.4499 -1.3756 -0.0071 12 7 9.4479 -2.6912 -0.0023 13 14 11.0690 -0.4440 -0.0091 14 1 11.1506 0.4095 1.2034 15 1 12.1964 -1.4106 -0.0103 16 1 11.1473 0.4098 -1.2215 17 7 4.7288 -1.3514 -0.0021 18 6 3.5654 -0.7187 -0.0009 19 8 2.2748 -1.1031 -0.0005 20 1 -0.3635 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5140 23 1 4.8066 2.4450 -0.0011 24 1 7.0603 -2.3328 -0.0045 25 1 10.2873 -3.1774 -0.0032 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260138646.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:10 Heat of formation + Delta-G solvation = 51.391942 kcal Electronic energy + Delta-G solvation = -13962.215764 eV Core-core repulsion = 11363.154739 eV Total energy + Delta-G solvation = -2599.061025 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.17375 -40.90461 -37.29503 -35.84048 -34.19368 -33.94776 -32.04614 -28.80458 -26.93652 -25.28671 -23.84963 -22.45204 -20.64056 -19.63921 -18.55870 -18.12487 -18.05506 -16.73476 -15.84732 -15.58795 -15.53405 -14.92991 -14.41431 -13.88037 -13.63675 -13.42786 -13.25967 -12.76542 -12.72452 -12.47825 -12.12903 -11.89856 -11.58381 -11.29908 -10.66137 -9.96549 -9.06994 -8.71133 -5.96681 -0.21594 0.28040 1.03738 1.41577 1.43899 1.56442 1.59287 2.17726 2.62939 2.67982 3.07246 3.19053 3.42815 3.53539 4.01660 4.34640 4.71732 4.75720 4.86169 4.92895 5.08775 5.28619 5.46736 5.64247 6.10054 6.43758 6.64528 6.87326 7.06454 7.65224 8.44986 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.080965 B = 0.006346 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.747496 B = 4411.204153 C = 4741.805348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.197 3.803 3 N -0.452 5.452 4 C -0.212 4.212 5 C 0.270 3.730 6 N -0.560 5.560 7 C 0.494 3.506 8 N -0.491 5.491 9 C -0.308 4.308 10 H 0.121 0.879 11 C -0.016 4.016 12 N -0.906 5.906 13 Si 1.016 2.984 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.261 1.261 17 N -0.618 5.618 18 C 0.294 3.706 19 O -0.229 6.229 20 H 0.113 0.887 21 H 0.107 0.893 22 H 0.120 0.880 23 H 0.209 0.791 24 H 0.407 0.593 25 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 5.887 -0.022 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.018 4.018 3 N -0.181 5.181 4 C -0.334 4.334 5 C 0.089 3.911 6 N -0.282 5.282 7 C 0.140 3.860 8 N -0.100 5.100 9 C -0.439 4.439 10 H 0.139 0.861 11 C -0.220 4.220 12 N -0.542 5.542 13 Si 0.837 3.163 14 H -0.186 1.186 15 H -0.199 1.199 16 H -0.185 1.185 17 N -0.361 5.361 18 C 0.101 3.899 19 O -0.117 6.117 20 H 0.132 0.868 21 H 0.125 0.875 22 H 0.138 0.862 23 H 0.225 0.775 24 H 0.243 0.757 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.197 5.737 -0.011 10.840 hybrid contribution 0.295 -0.987 -0.011 1.030 sum -8.902 4.751 -0.022 10.091 Atomic orbital electron populations 1.20615 0.76496 1.06800 1.06474 1.27536 0.97865 0.76574 0.99796 1.70165 0.99969 1.29609 1.18332 1.20892 0.94697 0.93515 1.24328 1.22777 0.82561 1.01132 0.84656 1.68043 1.30361 1.06308 1.23522 1.18764 0.84717 0.85337 0.97148 1.40694 1.01042 1.08604 1.59627 1.20331 0.81461 0.94339 1.47722 0.86137 1.26556 1.03637 0.96645 0.95118 1.69785 1.30829 1.07684 1.45901 0.84629 0.74303 0.77504 0.79855 1.18559 1.19877 1.18532 1.66144 0.94675 1.41335 1.33987 1.19974 0.84668 0.90635 0.94594 1.84286 1.13233 1.37924 1.76256 0.86843 0.87480 0.86150 0.77493 0.75655 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.72 10.51 71.23 0.75 0.03 15 2 C 0.20 6.07 8.24 88.39 0.73 6.80 15 3 N -0.45 -16.10 11.33 -295.84 -3.35 -19.45 15 4 C -0.21 -8.75 7.30 39.47 0.29 -8.46 15 5 C 0.27 10.61 11.37 84.97 0.97 11.58 15 6 N -0.56 -26.09 9.05 -197.12 -1.78 -27.87 15 7 C 0.49 25.29 8.37 261.37 2.19 27.47 15 8 N -0.49 -26.07 5.43 -194.29 -1.05 -27.13 15 9 C -0.31 -16.08 9.68 84.03 0.81 -15.26 15 10 H 0.12 6.16 7.03 -2.91 -0.02 6.14 15 11 C -0.02 -0.81 5.50 84.87 0.47 -0.35 15 12 N -0.91 -47.34 13.05 21.65 0.28 -47.06 15 13 Si 1.02 38.81 29.55 68.60 2.03 40.84 15 14 H -0.26 -9.64 7.11 99.48 0.71 -8.94 15 15 H -0.27 -10.10 7.11 99.48 0.71 -9.39 15 16 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15 17 N -0.62 -31.33 10.48 -311.00 -3.26 -34.59 15 18 C 0.29 13.43 8.66 85.23 0.74 14.17 15 19 O -0.23 -8.94 10.75 -7.02 -0.08 -9.02 15 20 H 0.11 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.11 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.12 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.21 6.09 8.06 -2.91 -0.02 6.06 15 24 H 0.41 22.17 8.00 -92.71 -0.74 21.43 15 25 H 0.29 13.91 8.31 -92.71 -0.77 13.14 15 Total: -1.00 -65.14 236.41 0.23 -64.91 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.51 Total: 23.39 kcal Atomic # 6 Polarization: 29.03 SS G_CDS: 6.94 Total: 35.97 kcal Atomic # 7 Polarization: -146.93 SS G_CDS: -9.17 Total: -156.10 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.08 Total: -9.02 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -65.14 0.23 -64.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138646.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.306 kcal (2) G-P(sol) polarization free energy of solvation -65.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds