Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.21291 * 2 1 4 4 C 1.54159 * 109.28522 * 119.50368 * 2 1 3 5 5 S 1.83299 * 100.99482 * 148.50162 * 4 2 1 6 6 C 1.77484 * 96.59446 * 335.23437 * 5 4 2 7 7 C 1.39288 * 130.41419 * 195.21723 * 6 5 4 8 8 C 1.38402 * 120.70467 * 179.75391 * 7 6 5 9 9 C 1.37688 * 119.56249 * 359.71230 * 8 7 6 10 10 C 1.40203 * 120.25998 * 0.55467 * 9 8 7 11 11 C 1.41403 * 119.73704 * 179.90160 * 10 9 8 12 12 H 1.08002 * 120.00354 * 216.72084 * 11 10 9 13 13 C 1.39935 * 119.99664 * 36.72075 * 11 10 9 14 14 N 1.30827 * 119.99898 * 9.01378 * 13 11 10 15 15 Si 1.86805 * 119.99707 * 189.01415 * 13 11 10 16 16 H 1.48491 * 109.46885 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47097 * 300.00308 * 15 13 11 18 18 H 1.48496 * 109.46940 * 60.00068 * 15 13 11 19 19 C 1.38284 * 108.30952 * 15.15496 * 6 5 4 20 20 H 1.08999 * 109.47248 * 170.28765 * 1 2 3 21 21 H 1.09007 * 109.47082 * 290.28806 * 1 2 3 22 22 H 1.09000 * 109.46968 * 50.28781 * 1 2 3 23 23 H 1.09003 * 111.11381 * 30.57311 * 4 2 1 24 24 H 1.09001 * 111.11612 * 266.43764 * 4 2 1 25 25 H 1.07999 * 119.64924 * 359.78086 * 7 6 5 26 26 H 1.08001 * 120.21583 * 179.97438 * 8 7 6 27 27 H 1.08003 * 119.86954 * 180.29946 * 9 8 7 28 28 H 0.96998 * 119.99591 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0391 -0.7166 1.2664 5 16 3.6027 -1.4478 0.6496 6 6 3.1391 -1.5059 -1.0626 7 6 3.7080 -2.1977 -2.1293 8 6 3.1715 -2.1006 -3.4013 9 6 2.0598 -1.3159 -3.6116 10 6 1.4815 -0.6103 -2.5470 11 6 0.3412 0.1940 -2.7759 12 1 0.2254 1.1294 -2.2487 13 6 -0.6374 -0.2223 -3.6855 14 7 -0.5903 -1.4281 -4.1907 15 14 -2.0110 0.9440 -4.1782 16 1 -2.9114 0.2674 -5.1458 17 1 -2.7848 1.3349 -2.9724 18 1 -1.4289 2.1566 -4.8073 19 6 2.0283 -0.7014 -1.2394 20 1 -0.3634 -1.0129 -0.1734 21 1 -0.3633 0.3564 0.9640 22 1 -0.3633 0.6566 -0.7905 23 1 1.3425 -1.4917 1.5859 24 1 2.2285 -0.0056 2.0706 25 1 4.5770 -2.8169 -1.9618 26 1 3.6193 -2.6402 -4.2228 27 1 1.6341 -1.2404 -4.6013 28 1 -1.2688 -1.7167 -4.8209 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260167813.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = -1.919781 kcal Electronic energy + Delta-G solvation = -12765.902359 eV Core-core repulsion = 10678.530028 eV Total energy + Delta-G solvation = -2087.372332 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.92861 -36.14911 -35.49492 -31.61823 -30.49669 -28.36579 -26.94145 -23.48653 -22.97431 -20.91481 -19.50154 -17.60930 -16.70419 -16.42656 -15.75537 -15.67423 -15.41863 -14.48475 -13.83245 -13.68923 -13.39250 -13.22293 -13.10570 -12.75252 -12.61591 -12.57036 -12.10927 -11.87076 -11.61802 -11.24947 -10.98738 -10.79537 -10.15275 -9.16437 -8.56117 -8.15636 -6.32188 0.75488 0.89975 0.96271 1.41529 1.47580 1.50875 1.54832 2.23927 2.76212 3.52259 3.86051 4.02615 4.22155 4.45047 4.54560 4.64365 4.77184 4.80231 5.03355 5.15766 5.17715 5.30713 5.34897 5.56943 5.65457 5.79399 5.98887 6.08812 6.22732 6.62594 6.95445 6.96640 8.44325 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.011401 C = 0.008962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.348018 B = 2455.408546 C = 3123.575547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 H 0.078 0.922 4 C -0.060 4.060 5 S -0.208 6.208 6 C -0.072 4.072 7 C -0.203 4.203 8 C -0.100 4.100 9 C -0.172 4.172 10 C 0.109 3.891 11 C -0.483 4.483 12 H 0.087 0.913 13 C 0.036 3.964 14 N -0.841 5.841 15 Si 0.972 3.028 16 H -0.276 1.276 17 H -0.256 1.256 18 H -0.262 1.262 19 C -0.209 4.209 20 H 0.029 0.971 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.097 0.903 24 H 0.137 0.863 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 2.757 5.546 6.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 H 0.096 0.904 4 C -0.208 4.208 5 S 0.031 5.969 6 C -0.183 4.183 7 C -0.227 4.227 8 C -0.119 4.119 9 C -0.193 4.193 10 C 0.105 3.895 11 C -0.513 4.513 12 H 0.105 0.895 13 C -0.177 4.177 14 N -0.469 5.469 15 Si 0.794 3.206 16 H -0.200 1.200 17 H -0.180 1.180 18 H -0.186 1.186 19 C -0.215 4.215 20 H 0.048 0.952 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.116 0.884 24 H 0.155 0.845 25 H 0.130 0.870 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.932 2.256 6.134 6.602 hybrid contribution -1.521 0.336 -1.386 2.085 sum -0.589 2.593 4.748 5.442 Atomic orbital electron populations 1.21874 0.93241 1.01693 1.02106 1.20159 0.97562 0.98482 0.89080 0.90427 1.24468 0.93976 1.02428 0.99903 1.85291 1.26388 1.82339 1.02835 1.21857 0.99156 1.01760 0.95552 1.20043 1.03901 1.06648 0.92084 1.20907 0.96327 0.98697 0.96014 1.21127 0.96668 1.02820 0.98671 1.17659 0.91605 0.91122 0.89106 1.19659 1.03557 1.06305 1.21806 0.89528 1.26592 1.01257 0.96230 0.93612 1.69847 1.34190 1.18088 1.24749 0.85382 0.77406 0.78731 0.79071 1.20043 1.18027 1.18618 1.21175 1.00412 1.04471 0.95447 0.95173 0.91036 0.91017 0.88396 0.84515 0.87008 0.85834 0.88249 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.12 71.98 0.58 -4.20 15 2 C -0.03 -1.29 3.00 -11.09 -0.03 -1.32 15 3 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 4 C -0.06 -1.90 7.02 72.37 0.51 -1.39 15 5 S -0.21 -7.91 23.08 -56.49 -1.30 -9.21 15 6 C -0.07 -3.31 6.48 22.53 0.15 -3.17 15 7 C -0.20 -9.27 10.06 22.56 0.23 -9.04 15 8 C -0.10 -4.63 10.06 22.18 0.22 -4.41 15 9 C -0.17 -8.94 8.55 22.62 0.19 -8.75 15 10 C 0.11 5.68 5.44 -21.08 -0.11 5.56 15 11 C -0.48 -24.26 6.61 23.46 0.16 -24.11 15 12 H 0.09 4.13 6.19 -2.91 -0.02 4.12 15 13 C 0.04 1.75 5.22 85.25 0.45 2.20 15 14 N -0.84 -43.44 11.29 21.82 0.25 -43.19 15 15 Si 0.97 37.07 29.57 68.60 2.03 39.09 15 16 H -0.28 -10.25 7.11 99.48 0.71 -9.54 15 17 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 19 C -0.21 -9.91 5.57 -18.86 -0.11 -10.01 15 20 H 0.03 1.21 8.11 -2.39 -0.02 1.19 15 21 H 0.07 2.02 8.11 -2.38 -0.02 2.01 15 22 H 0.07 2.84 4.86 -2.39 -0.01 2.83 15 23 H 0.10 2.93 7.93 -2.39 -0.02 2.91 15 24 H 0.14 3.29 8.14 -2.39 -0.02 3.27 15 25 H 0.11 4.58 8.06 -2.91 -0.02 4.55 15 26 H 0.12 4.95 8.06 -2.91 -0.02 4.93 15 27 H 0.10 5.36 6.72 -2.91 -0.02 5.34 15 28 H 0.28 13.50 8.30 -92.71 -0.77 12.74 15 Total: -1.00 -56.82 244.00 4.36 -52.46 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 1.16 Total: 19.50 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 2.23 Total: -58.65 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.25 Total: -43.19 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.09 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.30 Total: -9.21 kcal Total: -56.82 4.36 -52.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167813.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.538 kcal (2) G-P(sol) polarization free energy of solvation -56.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds