Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 108.86633 * 2 1 4 4 C 1.52495 * 108.90234 * 118.61386 * 2 1 3 5 5 S 1.81488 * 105.09838 * 120.77169 * 4 2 1 6 6 C 1.76816 * 97.03035 * 359.97438 * 5 4 2 7 7 C 1.40340 * 129.04371 * 179.97438 * 6 5 4 8 8 C 1.35943 * 120.76604 * 180.02562 * 7 6 5 9 9 C 1.40945 * 119.14257 * 0.02562 * 8 7 6 10 10 C 1.41068 * 120.11193 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99985 * 205.17518 * 10 9 8 12 12 C 1.39830 * 120.00226 * 25.17438 * 10 9 8 13 13 N 1.30922 * 120.00067 * 17.38810 * 12 10 9 14 14 Si 1.86805 * 119.99934 * 197.10330 * 12 10 9 15 15 H 1.48494 * 109.47688 * 265.46725 * 14 12 10 16 16 H 1.48504 * 109.46850 * 25.47304 * 14 12 10 17 17 H 1.48502 * 109.46604 * 145.46640 * 14 12 10 18 18 C 1.40253 * 119.76953 * 0.25447 * 9 8 7 19 19 C 1.38063 * 120.92390 * 359.48222 * 18 9 8 20 20 H 1.08995 * 109.46948 * 302.84216 * 1 2 3 21 21 H 1.08999 * 109.46712 * 62.83621 * 1 2 3 22 22 H 1.08994 * 109.46957 * 182.83780 * 1 2 3 23 23 H 1.09004 * 110.31916 * 1.86884 * 4 2 1 24 24 H 1.09000 * 110.31966 * 239.67750 * 4 2 1 25 25 H 1.08002 * 119.61252 * 359.97438 * 7 6 5 26 26 H 1.08000 * 120.42502 * 179.97438 * 8 7 6 27 27 H 0.97000 * 120.00037 * 179.71622 * 13 12 10 28 28 H 1.08000 * 119.53961 * 179.74676 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8825 1.0314 0.0000 4 6 2.0241 -0.6909 1.2665 5 16 3.0254 -2.0877 0.6832 6 6 2.8165 -1.7956 -1.0481 7 6 3.3342 -2.5166 -2.1351 8 6 3.0640 -2.1384 -3.4126 9 6 2.2539 -1.0070 -3.6366 10 6 1.9609 -0.5960 -4.9539 11 1 1.7117 0.4355 -5.1549 12 6 1.9932 -1.5240 -5.9994 13 7 1.9545 -2.8062 -5.7380 14 14 2.0835 -0.9339 -7.7695 15 1 0.7133 -0.8595 -8.3371 16 1 2.7104 0.4116 -7.8114 17 1 2.8987 -1.8849 -8.5672 18 6 1.7448 -0.2879 -2.5454 19 6 2.0170 -0.6782 -1.2493 20 1 -0.3633 0.5573 0.8634 21 1 -0.3633 0.4692 -0.9143 22 1 -0.3633 -1.0264 0.0509 23 1 1.1801 -1.0502 1.8555 24 1 2.6349 -0.0078 1.8567 25 1 3.9552 -3.3816 -1.9545 26 1 3.4657 -2.6971 -4.2450 27 1 1.9727 -3.4499 -6.4635 28 1 1.1278 0.5809 -2.7213 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219156.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = 1.195509 kcal Electronic energy + Delta-G solvation = -12418.821744 eV Core-core repulsion = 10331.584501 eV Total energy + Delta-G solvation = -2087.237243 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.22285 -35.33755 -33.26008 -29.94151 -28.71261 -27.15572 -25.29039 -22.21026 -20.97448 -19.67377 -17.11379 -16.33292 -15.30291 -14.93687 -14.06193 -13.87913 -13.69733 -12.76256 -12.62577 -12.29539 -11.91733 -11.63780 -11.44399 -11.23807 -10.99628 -10.82795 -10.72147 -10.59958 -10.05320 -9.56321 -9.35168 -9.23609 -8.28187 -7.53142 -6.88455 -6.54556 -4.39992 2.50242 2.59840 2.87228 3.02322 3.05007 3.11145 3.30565 3.85809 4.46444 5.10966 5.19820 5.37702 5.57398 5.78533 5.85907 5.94111 6.19603 6.24226 6.33329 6.56830 6.82123 6.89472 7.01998 7.18260 7.47554 7.55058 7.81010 7.92357 8.12594 8.49258 8.77128 8.82411 10.07874 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.049954 B = 0.008077 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.383252 B = 3465.818621 C = 3864.815086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 H 0.078 0.922 4 C -0.081 4.081 5 S -0.196 6.196 6 C -0.197 4.197 7 C -0.068 4.068 8 C -0.146 4.146 9 C 0.116 3.884 10 C -0.456 4.456 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.790 5.790 14 Si 0.910 3.090 15 H -0.270 1.270 16 H -0.260 1.260 17 H -0.274 1.274 18 C -0.207 4.207 19 C -0.063 4.063 20 H 0.050 0.950 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.125 0.875 27 H 0.283 0.717 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 3.074 5.145 6.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 H 0.097 0.903 4 C -0.229 4.229 5 S 0.042 5.958 6 C -0.309 4.309 7 C -0.091 4.091 8 C -0.167 4.167 9 C 0.112 3.888 10 C -0.485 4.485 11 H 0.098 0.902 12 C -0.143 4.143 13 N -0.414 5.414 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.183 1.183 17 H -0.199 1.199 18 C -0.228 4.228 19 C -0.068 4.068 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.143 0.857 27 H 0.094 0.906 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.281 1.973 5.769 6.103 hybrid contribution -0.678 1.014 -1.540 1.965 sum -0.958 2.987 4.228 5.265 Atomic orbital electron populations 1.21853 0.93976 1.02044 1.01451 1.19934 0.96713 0.99669 0.90828 0.90348 1.23596 1.01410 0.98134 0.99777 1.84898 1.66833 1.40053 1.04022 1.21133 1.13229 1.04011 0.92552 1.19886 0.99672 0.97926 0.91593 1.20984 1.00884 1.00267 0.94559 1.17433 0.88264 0.90659 0.92412 1.19518 1.41076 0.96513 0.91382 0.90221 1.25940 0.92063 0.94379 1.01934 1.69857 1.34339 1.02090 1.35159 0.86269 0.79167 0.80054 0.81117 1.19487 1.18331 1.19925 1.20350 1.07683 1.04457 0.90319 1.19640 0.98256 0.95304 0.93629 0.93138 0.91988 0.92441 0.89186 0.89478 0.89039 0.85692 0.90646 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.74 37.16 0.32 -1.80 15 2 C -0.05 -0.93 3.19 -92.24 -0.29 -1.23 15 3 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 4 C -0.08 -1.31 6.90 36.90 0.25 -1.05 15 5 S -0.20 -3.89 23.17 -107.50 -2.49 -6.38 15 6 C -0.20 -4.62 6.43 -38.56 -0.25 -4.86 15 7 C -0.07 -1.66 9.99 -39.61 -0.40 -2.06 15 8 C -0.15 -3.78 8.64 -39.38 -0.34 -4.12 15 9 C 0.12 3.04 5.55 -107.04 -0.59 2.45 15 10 C -0.46 -11.75 9.02 -37.91 -0.34 -12.10 15 11 H 0.08 1.97 7.90 -52.48 -0.41 1.55 15 12 C 0.08 1.84 5.14 -17.34 -0.09 1.75 15 13 N -0.79 -19.93 10.97 55.54 0.61 -19.32 15 14 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 15 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 16 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 18 C -0.21 -5.01 9.23 -38.89 -0.36 -5.37 15 19 C -0.06 -1.42 5.29 -104.67 -0.55 -1.97 15 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.06 1.00 7.70 -51.93 -0.40 0.60 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.09 1.29 7.61 -51.93 -0.40 0.90 15 24 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.09 2.06 8.06 -52.49 -0.42 1.64 15 26 H 0.13 3.28 6.21 -52.49 -0.33 2.96 15 27 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 28 H 0.09 2.11 7.90 -52.49 -0.41 1.69 15 LS Contribution 249.39 15.07 3.76 3.76 Total: -1.00 -26.94 249.39 -8.99 -35.93 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.20 Total: 3.31 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: -2.64 Total: -30.37 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -2.49 Total: -6.38 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.94 -8.99 -35.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219156.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.123 kcal (2) G-P(sol) polarization free energy of solvation -26.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds