Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 108.86633 * 2 1 4 4 C 1.52495 * 108.90234 * 118.61386 * 2 1 3 5 5 S 1.81488 * 105.09838 * 120.77169 * 4 2 1 6 6 C 1.76816 * 97.03035 * 359.97438 * 5 4 2 7 7 C 1.40340 * 129.04371 * 179.97438 * 6 5 4 8 8 C 1.35943 * 120.76604 * 180.02562 * 7 6 5 9 9 C 1.40945 * 119.14257 * 0.02562 * 8 7 6 10 10 C 1.41068 * 120.11193 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99985 * 205.17518 * 10 9 8 12 12 C 1.39830 * 120.00226 * 25.17438 * 10 9 8 13 13 N 1.30922 * 120.00067 * 17.38810 * 12 10 9 14 14 Si 1.86805 * 119.99934 * 197.10330 * 12 10 9 15 15 H 1.48494 * 109.47688 * 265.46725 * 14 12 10 16 16 H 1.48504 * 109.46850 * 25.47304 * 14 12 10 17 17 H 1.48502 * 109.46604 * 145.46640 * 14 12 10 18 18 C 1.40253 * 119.76953 * 0.25447 * 9 8 7 19 19 C 1.38063 * 120.92390 * 359.48222 * 18 9 8 20 20 H 1.08995 * 109.46948 * 302.84216 * 1 2 3 21 21 H 1.08999 * 109.46712 * 62.83621 * 1 2 3 22 22 H 1.08994 * 109.46957 * 182.83780 * 1 2 3 23 23 H 1.09004 * 110.31916 * 1.86884 * 4 2 1 24 24 H 1.09000 * 110.31966 * 239.67750 * 4 2 1 25 25 H 1.08002 * 119.61252 * 359.97438 * 7 6 5 26 26 H 1.08000 * 120.42502 * 179.97438 * 8 7 6 27 27 H 0.97000 * 120.00037 * 179.71622 * 13 12 10 28 28 H 1.08000 * 119.53961 * 179.74676 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8825 1.0314 0.0000 4 6 2.0241 -0.6909 1.2665 5 16 3.0254 -2.0877 0.6832 6 6 2.8165 -1.7956 -1.0481 7 6 3.3342 -2.5166 -2.1351 8 6 3.0640 -2.1384 -3.4126 9 6 2.2539 -1.0070 -3.6366 10 6 1.9609 -0.5960 -4.9539 11 1 1.7117 0.4355 -5.1549 12 6 1.9932 -1.5240 -5.9994 13 7 1.9545 -2.8062 -5.7380 14 14 2.0835 -0.9339 -7.7695 15 1 0.7133 -0.8595 -8.3371 16 1 2.7104 0.4116 -7.8114 17 1 2.8987 -1.8849 -8.5672 18 6 1.7448 -0.2879 -2.5454 19 6 2.0170 -0.6782 -1.2493 20 1 -0.3633 0.5573 0.8634 21 1 -0.3633 0.4692 -0.9143 22 1 -0.3633 -1.0264 0.0509 23 1 1.1801 -1.0502 1.8555 24 1 2.6349 -0.0078 1.8567 25 1 3.9552 -3.3816 -1.9545 26 1 3.4657 -2.6971 -4.2450 27 1 1.9727 -3.4499 -6.4635 28 1 1.1278 0.5809 -2.7213 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219156.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = -11.786195 kcal Electronic energy + Delta-G solvation = -12419.384673 eV Core-core repulsion = 10331.584501 eV Total energy + Delta-G solvation = -2087.800171 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.97209 -36.96963 -35.03542 -31.82314 -30.45786 -28.50280 -27.11121 -23.82271 -22.82407 -21.34186 -18.92941 -18.05433 -17.07304 -16.36069 -15.71843 -15.55542 -15.36777 -14.32524 -14.25607 -13.84606 -13.63107 -13.16936 -13.02617 -12.83655 -12.56556 -12.42124 -12.24688 -12.21979 -11.74313 -11.28382 -11.15642 -10.89828 -10.09043 -9.39659 -8.71779 -8.23201 -6.32385 0.77657 0.99163 1.02902 1.38311 1.46314 1.54200 1.66061 2.18669 2.61791 3.56575 3.77285 3.94074 4.02164 4.31401 4.53811 4.61583 4.68311 4.87333 4.90893 4.99086 5.06878 5.18554 5.32844 5.35218 5.60560 5.69231 5.90202 6.01694 6.22817 6.57364 6.85847 6.91011 8.27202 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.049954 B = 0.008077 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.383252 B = 3465.818621 C = 3864.815086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 H 0.097 0.903 4 C -0.070 4.070 5 S -0.200 6.200 6 C -0.218 4.218 7 C -0.080 4.080 8 C -0.169 4.169 9 C 0.086 3.914 10 C -0.489 4.489 11 H 0.081 0.919 12 C 0.035 3.965 13 N -0.823 5.823 14 Si 0.985 3.015 15 H -0.261 1.261 16 H -0.257 1.257 17 H -0.266 1.266 18 C -0.222 4.222 19 C -0.064 4.064 20 H 0.090 0.910 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.291 0.709 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 4.245 6.351 7.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 H 0.115 0.885 4 C -0.218 4.218 5 S 0.037 5.963 6 C -0.329 4.329 7 C -0.102 4.102 8 C -0.190 4.190 9 C 0.083 3.917 10 C -0.518 4.518 11 H 0.099 0.901 12 C -0.180 4.180 13 N -0.448 5.448 14 Si 0.806 3.194 15 H -0.186 1.186 16 H -0.181 1.181 17 H -0.190 1.190 18 C -0.243 4.243 19 C -0.070 4.070 20 H 0.109 0.891 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.135 0.865 24 H 0.136 0.864 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.893 3.140 6.999 7.723 hybrid contribution -0.492 0.640 -1.768 1.944 sum -1.385 3.781 5.231 6.601 Atomic orbital electron populations 1.21825 0.92213 1.01920 1.02849 1.20031 0.98152 1.00099 0.89145 0.88534 1.23822 1.02035 0.96671 0.99280 1.84845 1.68018 1.42507 1.00921 1.21540 1.12683 1.04039 0.94688 1.20075 0.99921 0.98451 0.91787 1.20915 1.02206 1.00998 0.94892 1.17802 0.88943 0.91368 0.93590 1.19788 1.42801 0.97014 0.92224 0.90095 1.26820 0.90916 0.94172 1.06116 1.69912 1.34726 1.03299 1.36883 0.85141 0.79477 0.79507 0.75312 1.18588 1.18060 1.19040 1.20534 1.08068 1.04760 0.90987 1.20213 0.96924 0.94895 0.94923 0.89104 0.93015 0.93591 0.86517 0.86386 0.88197 0.87188 0.89868 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.74 71.98 0.63 -3.03 15 2 C -0.06 -1.80 3.19 -11.84 -0.04 -1.83 15 3 H 0.10 2.84 8.14 -2.39 -0.02 2.82 15 4 C -0.07 -1.97 6.90 71.81 0.50 -1.48 15 5 S -0.20 -7.56 23.17 -56.49 -1.31 -8.87 15 6 C -0.22 -10.14 6.43 22.93 0.15 -9.99 15 7 C -0.08 -4.01 9.99 22.25 0.22 -3.78 15 8 C -0.17 -9.16 8.64 22.40 0.19 -8.97 15 9 C 0.09 4.71 5.55 -21.43 -0.12 4.59 15 10 C -0.49 -26.06 9.02 23.35 0.21 -25.85 15 11 H 0.08 4.11 7.90 -2.91 -0.02 4.09 15 12 C 0.04 1.76 5.14 85.21 0.44 2.20 15 13 N -0.82 -42.80 10.97 21.81 0.24 -42.56 15 14 Si 0.99 37.38 29.59 68.60 2.03 39.41 15 15 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 17 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 18 C -0.22 -10.94 9.23 22.72 0.21 -10.73 15 19 C -0.06 -2.85 5.29 -19.89 -0.11 -2.95 15 20 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 21 H 0.05 1.55 7.70 -2.39 -0.02 1.53 15 22 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.12 2.74 7.61 -2.38 -0.02 2.72 15 24 H 0.12 2.68 8.14 -2.39 -0.02 2.66 15 25 H 0.10 4.66 8.06 -2.91 -0.02 4.63 15 26 H 0.11 6.13 6.21 -2.91 -0.02 6.12 15 27 H 0.29 13.59 8.30 -92.71 -0.77 12.82 15 28 H 0.10 4.61 7.90 -2.91 -0.02 4.59 15 Total: -1.00 -59.65 249.39 4.39 -55.26 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 1.15 Total: 18.61 kcal Atomic # 6 Polarization: -64.13 SS G_CDS: 2.28 Total: -61.84 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.24 Total: -42.56 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.31 Total: -8.87 kcal Total: -59.65 4.39 -55.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219156.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.474 kcal (2) G-P(sol) polarization free energy of solvation -59.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds