Wall clock time and date at job start Mon Mar 30 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38277 * 119.93084 * 2 1 4 4 C 1.38500 * 120.02780 * 179.97438 * 3 2 1 5 5 C 1.39307 * 119.83155 * 0.02562 * 4 3 2 6 6 C 1.38505 * 119.82466 * 359.95868 * 5 4 3 7 7 C 1.50705 * 119.98718 * 179.73031 * 6 5 4 8 8 C 1.50693 * 109.47472 * 84.99520 * 7 6 5 9 9 H 1.08001 * 119.99745 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00422 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99470 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00075 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47311 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47001 * 120.00060 * 12 10 8 15 15 H 1.48505 * 109.46579 * 239.99737 * 12 10 8 16 16 C 1.38217 * 119.92375 * 179.91277 * 2 1 3 17 17 O 1.36502 * 108.63673 * 179.97438 * 5 4 3 18 18 C 1.43989 * 105.48479 * 342.71800 * 17 5 4 19 19 O 1.36501 * 131.53870 * 179.97438 * 4 3 2 20 20 H 1.09004 * 109.46966 * 89.99436 * 1 2 3 21 21 H 1.08997 * 109.47415 * 209.99887 * 1 2 3 22 22 H 1.09002 * 109.46891 * 329.99885 * 1 2 3 23 23 H 1.07995 * 119.98389 * 359.95996 * 3 2 1 24 24 H 1.09001 * 109.47102 * 205.00059 * 7 6 5 25 25 H 1.09000 * 109.46769 * 324.99784 * 7 6 5 26 26 H 0.96999 * 119.99816 * 180.02562 * 11 10 8 27 27 H 1.07994 * 119.92692 * 0.07652 * 16 2 1 28 28 H 1.09001 * 110.56903 * 268.56427 * 18 17 5 29 29 H 1.09003 * 110.69733 * 145.75277 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5820 1.2007 0.0005 5 6 4.2770 -0.0066 0.0005 6 6 3.5793 -1.2031 0.0009 7 6 4.3275 -2.5113 -0.0053 8 6 4.6906 -2.8890 1.4076 9 1 4.4075 -2.2463 2.2281 10 6 5.3842 -4.0551 1.6530 11 7 5.7284 -4.8380 0.6539 12 14 5.8336 -4.5236 3.4045 13 1 5.3345 -3.4830 4.3389 14 1 5.2143 -5.8305 3.7418 15 1 7.3100 -4.6296 3.5252 16 6 2.1965 -1.1979 0.0018 17 8 5.6156 0.2607 0.0005 18 6 5.7332 1.6353 -0.4117 19 8 4.4854 2.2239 0.0002 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6556 2.1328 -0.0007 24 1 3.6975 -3.2881 -0.4386 25 1 5.2360 -2.4074 -0.5985 26 1 6.2161 -5.6585 0.8265 27 1 1.6541 -2.1318 0.0020 28 1 5.8492 1.7021 -1.4935 29 1 6.5699 2.1186 0.0928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260239601.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:04 Heat of formation + Delta-G solvation = -50.824777 kcal Electronic energy + Delta-G solvation = -14558.870083 eV Core-core repulsion = 12026.624200 eV Total energy + Delta-G solvation = -2532.245882 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.59107 -37.78673 -35.77912 -33.54045 -31.76402 -30.39427 -27.34360 -26.53647 -24.91390 -23.41130 -21.86057 -20.16160 -17.36104 -17.01885 -16.68779 -16.20846 -15.57327 -14.52295 -14.06017 -13.71152 -13.41619 -13.15799 -12.76524 -12.51457 -12.30714 -12.01126 -11.83933 -11.62217 -11.14990 -11.03478 -10.53100 -10.48687 -10.17340 -9.54594 -9.40466 -8.40773 -7.89967 -7.40378 -6.02413 -4.05393 1.71377 1.87800 3.28723 3.31347 3.38504 3.44475 3.98409 4.15351 4.48282 5.02400 5.08768 5.18111 5.31479 5.34431 5.40854 5.70967 5.77053 5.81396 5.97070 6.10781 6.20856 6.62222 6.69708 6.83413 6.98265 7.14314 7.51499 7.72939 7.75696 7.93023 8.31761 8.98423 9.57755 11.07870 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.027286 B = 0.009350 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.927337 B = 2993.839541 C = 3606.172750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.086 4.086 3 C -0.128 4.128 4 C 0.024 3.976 5 C 0.027 3.973 6 C -0.015 4.015 7 C 0.051 3.949 8 C -0.507 4.507 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.114 4.114 17 O -0.294 6.294 18 C 0.210 3.790 19 O -0.319 6.319 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.123 0.877 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 10.574 -2.863 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.020 4.020 5 C -0.017 4.017 6 C -0.015 4.015 7 C 0.015 3.985 8 C -0.546 4.546 9 H 0.075 0.925 10 C -0.142 4.142 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.132 4.132 17 O -0.209 6.209 18 C 0.097 3.903 19 O -0.236 6.236 20 H 0.085 0.915 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.141 0.859 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.092 0.908 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.716 10.510 -2.795 12.286 hybrid contribution 0.667 -0.141 0.886 1.118 sum -5.049 10.369 -1.909 11.690 Atomic orbital electron populations 1.20674 0.90842 1.02559 1.01958 1.19536 0.95781 0.92054 1.01220 1.19598 0.88709 0.98371 1.07970 1.19770 0.91926 0.85291 1.04979 1.19618 0.82027 0.94228 1.05859 1.19814 0.92824 0.94601 0.94297 1.18313 0.95041 0.87011 0.98172 1.21045 1.35755 1.06024 0.91730 0.92508 1.24984 0.95699 0.96304 0.97262 1.69965 1.39610 1.13142 1.30668 0.86468 0.78193 0.78338 0.84674 1.19677 1.20895 1.20929 1.20777 0.92444 0.97574 1.02392 1.87480 1.21278 1.27573 1.84597 1.25504 0.87361 0.78027 0.99381 1.87252 1.18972 1.32079 1.85265 0.91480 0.91333 0.91936 0.85919 0.94886 0.94937 0.92910 0.84930 0.90828 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.01 36.01 0.36 -0.88 15 2 C -0.09 -1.40 5.88 -104.61 -0.62 -2.01 15 3 C -0.13 -2.15 9.71 -39.47 -0.38 -2.53 15 4 C 0.02 0.47 7.15 -39.09 -0.28 0.19 15 5 C 0.03 0.59 6.83 -39.09 -0.27 0.32 15 6 C -0.01 -0.33 5.08 -104.51 -0.53 -0.86 15 7 C 0.05 1.37 5.10 -29.04 -0.15 1.22 15 8 C -0.51 -14.67 9.09 -34.44 -0.31 -14.98 15 9 H 0.06 1.65 7.74 -52.49 -0.41 1.25 15 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 11 N -0.89 -26.82 13.29 55.43 0.74 -26.09 15 12 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 15 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 16 C -0.11 -2.18 9.32 -39.57 -0.37 -2.55 15 17 O -0.29 -6.30 11.39 -45.69 -0.52 -6.82 15 18 C 0.21 3.29 8.89 101.05 0.90 4.19 15 19 O -0.32 -5.66 11.40 -45.69 -0.52 -6.18 15 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.07 0.77 8.08 -51.93 -0.42 0.35 15 22 H 0.06 0.65 8.08 -51.93 -0.42 0.23 15 23 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 24 H 0.03 0.89 8.05 -51.93 -0.42 0.47 15 25 H 0.03 0.93 8.12 -51.93 -0.42 0.51 15 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 27 H 0.13 2.36 8.06 -52.49 -0.42 1.94 15 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 29 H 0.12 1.48 8.14 -51.93 -0.42 1.06 15 LS Contribution 258.39 15.07 3.89 3.89 Total: -1.00 -32.17 258.39 -6.51 -38.68 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -3.33 Total: -4.18 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.74 Total: -16.31 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.04 Total: -13.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.17 -6.51 -38.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260239601.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.144 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds