Wall clock time and date at job start Mon Mar 30 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32350 * 120.58021 * 2 1 4 4 C 1.32712 * 121.19643 * 180.02562 * 3 2 1 5 5 N 1.38554 * 118.94043 * 180.02562 * 4 3 2 6 6 C 1.36977 * 120.00141 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00127 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00356 * 180.02562 * 6 5 4 9 9 N 1.31562 * 119.99757 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00525 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46845 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47496 * 119.99516 * 10 8 6 13 13 H 1.48491 * 109.47258 * 240.00084 * 10 8 6 14 14 N 1.32316 * 122.11951 * 0.02874 * 4 3 2 15 15 C 1.33156 * 120.29274 * 359.95157 * 14 4 3 16 16 N 1.35485 * 134.69251 * 180.02562 * 15 14 4 17 17 C 1.30173 * 108.89410 * 180.02562 * 16 15 14 18 18 O 1.34134 * 110.30964 * 359.97438 * 17 16 15 19 19 C 1.34899 * 108.07818 * 0.02562 * 18 17 16 20 20 H 1.08997 * 109.46844 * 269.97073 * 1 2 3 21 21 H 1.09000 * 109.46890 * 29.97464 * 1 2 3 22 22 H 1.08997 * 109.46751 * 149.97341 * 1 2 3 23 23 H 0.97005 * 120.00301 * 0.02562 * 5 4 3 24 24 H 0.97001 * 120.00103 * 180.02562 * 9 8 6 25 25 H 1.07994 * 124.84590 * 180.26530 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1804 1.1394 0.0000 4 6 3.5074 1.1537 -0.0005 5 7 4.1648 2.3734 0.0001 6 6 5.5340 2.4135 -0.0010 7 1 6.1012 1.4944 -0.0027 8 6 6.1927 3.6354 0.0001 9 7 5.5018 4.7550 0.0017 10 14 8.0599 3.6901 -0.0020 11 1 8.5956 2.3051 -0.0042 12 1 8.5328 4.4061 -1.2140 13 1 8.5356 4.4024 1.2110 14 7 4.2230 0.0407 -0.0016 15 6 3.6190 -1.1460 -0.0013 16 7 4.0453 -2.4321 -0.0016 17 6 3.0088 -3.2197 -0.0015 18 8 1.8770 -2.4997 -0.0005 19 6 2.2121 -1.1930 -0.0005 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5142 23 1 3.6555 3.1989 0.0012 24 1 5.9620 5.6089 0.0021 25 1 3.0537 -4.2987 0.0023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260246401.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:51 Heat of formation + Delta-G solvation = 52.169530 kcal Electronic energy + Delta-G solvation = -14155.441057 eV Core-core repulsion = 11556.413751 eV Total energy + Delta-G solvation = -2599.027306 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.15228 -40.86093 -37.27914 -36.16925 -34.39040 -33.40304 -31.49393 -28.97637 -27.07758 -24.82144 -24.08123 -22.35941 -20.51739 -19.69081 -18.77255 -17.82473 -17.81073 -16.46574 -16.24491 -15.57334 -15.51936 -15.38217 -14.21001 -14.17616 -13.59408 -13.19729 -13.18352 -12.74615 -12.59669 -12.32475 -12.08265 -11.96396 -11.76399 -10.72337 -10.65928 -9.86200 -9.22325 -8.62687 -5.92601 -0.23195 0.22988 1.39355 1.42394 1.54531 1.57263 1.67094 2.13951 2.45916 2.70429 2.92039 3.24165 3.41015 3.70080 3.98253 4.27448 4.75412 4.77569 4.82371 4.84789 5.21749 5.30191 5.37477 5.67468 6.24748 6.54008 6.61350 7.00327 7.18296 7.79721 8.54692 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.042266 B = 0.008043 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.314157 B = 3480.434931 C = 4127.605566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.268 3.732 3 N -0.573 5.573 4 C 0.497 3.503 5 N -0.511 5.511 6 C -0.308 4.308 7 H 0.100 0.900 8 C -0.016 4.016 9 N -0.913 5.913 10 Si 1.008 2.992 11 H -0.268 1.268 12 H -0.268 1.268 13 H -0.268 1.268 14 N -0.597 5.597 15 C 0.301 3.699 16 N -0.545 5.545 17 C 0.295 3.705 18 O -0.197 6.197 19 C -0.229 4.229 20 H 0.104 0.896 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.410 0.590 24 H 0.284 0.716 25 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -11.816 0.041 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.110 3.890 3 N -0.299 5.299 4 C 0.141 3.859 5 N -0.126 5.126 6 C -0.439 4.439 7 H 0.118 0.882 8 C -0.218 4.218 9 N -0.551 5.551 10 Si 0.830 3.170 11 H -0.192 1.192 12 H -0.193 1.193 13 H -0.193 1.193 14 N -0.332 5.332 15 C 0.052 3.948 16 N -0.281 5.281 17 C 0.063 3.937 18 O -0.084 6.084 19 C -0.290 4.290 20 H 0.122 0.878 21 H 0.109 0.891 22 H 0.120 0.880 23 H 0.247 0.753 24 H 0.093 0.907 25 H 0.341 0.659 Dipole moment (debyes) X Y Z Total from point charges -6.785 -10.705 0.039 12.674 hybrid contribution -0.105 0.126 0.007 0.164 sum -6.890 -10.579 0.046 12.625 Atomic orbital electron populations 1.20889 0.83774 1.05237 1.05141 1.21073 0.98543 0.82123 0.87279 1.67919 1.07526 1.28452 1.26037 1.19030 0.84440 0.86513 0.95909 1.40489 1.06525 1.02351 1.63195 1.20072 0.80682 0.95089 1.48067 0.88201 1.26316 1.05992 0.93627 0.95843 1.69770 1.38741 0.98516 1.48025 0.84652 0.75146 0.78724 0.78521 1.19191 1.19304 1.19313 1.66891 1.40144 0.95676 1.30521 1.20497 0.88437 0.91501 0.94342 1.70348 1.33096 0.98762 1.25847 1.30021 0.75455 1.01358 0.86824 1.84346 1.35557 1.13996 1.74494 1.21130 0.97045 0.85826 1.24950 0.87767 0.89061 0.87984 0.75350 0.90688 0.65851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.25 10.23 71.24 0.73 -1.52 15 2 C 0.27 10.11 6.84 42.56 0.29 10.40 15 3 N -0.57 -26.37 10.38 -185.86 -1.93 -28.30 15 4 C 0.50 26.41 8.37 261.39 2.19 28.59 15 5 N -0.51 -28.47 5.43 -194.30 -1.06 -29.53 15 6 C -0.31 -17.64 9.69 84.03 0.81 -16.83 15 7 H 0.10 5.96 7.03 -2.91 -0.02 5.94 15 8 C -0.02 -0.86 5.50 84.87 0.47 -0.40 15 9 N -0.91 -49.98 13.05 21.65 0.28 -49.69 15 10 Si 1.01 42.74 29.55 68.60 2.03 44.77 15 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 12 H -0.27 -10.84 7.11 99.48 0.71 -10.14 15 13 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 14 N -0.60 -32.27 9.13 -196.62 -1.80 -34.07 15 15 C 0.30 13.87 8.44 134.40 1.13 15.01 15 16 N -0.55 -20.59 11.32 -313.05 -3.54 -24.13 15 17 C 0.30 6.91 13.13 130.49 1.71 8.62 15 18 O -0.20 -5.55 10.77 -6.81 -0.07 -5.62 15 19 C -0.23 -8.78 7.19 22.97 0.17 -8.61 15 20 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.10 1.95 8.10 -2.39 -0.02 1.93 15 23 H 0.41 22.68 8.00 -92.70 -0.74 21.93 15 24 H 0.28 14.33 8.31 -92.71 -0.77 13.55 15 25 H 0.33 1.96 8.06 -2.91 -0.02 1.94 15 Total: -1.00 -74.77 236.12 1.92 -72.85 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.51 Total: 18.47 kcal Atomic # 6 Polarization: 27.76 SS G_CDS: 7.50 Total: 35.26 kcal Atomic # 7 Polarization: -157.69 SS G_CDS: -8.04 Total: -165.73 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.07 Total: -5.62 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.77 1.92 -72.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246401.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.019 kcal (2) G-P(sol) polarization free energy of solvation -74.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds