Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48503 * 109.46905 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46865 * 299.99782 * 3 2 1 6 6 H 1.48496 * 109.47145 * 59.99761 * 3 2 1 7 7 C 1.37882 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00133 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47029 * 179.97438 * 9 7 2 11 11 C 1.38612 * 119.99850 * 179.97438 * 10 9 7 12 12 N 1.32780 * 118.96231 * 0.02562 * 11 10 9 13 13 C 1.32106 * 121.30047 * 180.02562 * 12 11 10 14 14 C 1.39197 * 118.84598 * 359.95816 * 13 12 11 15 15 O 1.34624 * 134.42064 * 180.02562 * 14 13 12 16 16 N 1.41421 * 109.29509 * 180.02562 * 15 14 13 17 17 C 1.29774 * 109.71513 * 359.97438 * 16 15 14 18 18 C 1.40503 * 118.36770 * 0.02562 * 14 13 12 19 19 N 1.32143 * 118.96425 * 180.02562 * 11 10 9 20 20 H 0.96997 * 119.99916 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46559 * 60.00015 * 9 7 2 22 22 H 1.09004 * 109.47262 * 300.00433 * 9 7 2 23 23 H 0.97000 * 120.00207 * 0.02562 * 10 9 7 24 24 H 1.07997 * 120.57485 * 179.97438 * 13 12 11 25 25 H 1.07996 * 126.27700 * 179.73316 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0015 11 6 1.7410 -4.9195 0.0029 12 7 0.4314 -5.1385 0.0040 13 6 -0.0594 -6.3650 0.0060 14 6 0.8231 -7.4414 0.0060 15 8 0.6769 -8.7797 0.0071 16 7 1.9530 -9.3892 0.0070 17 6 2.8746 -8.4755 0.0052 18 6 2.2024 -7.1739 0.0044 19 7 2.6177 -5.9082 0.0032 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6247 -2.5563 0.8919 23 1 3.1567 -3.4354 0.0010 24 1 -1.1268 -6.5295 0.0073 25 1 3.9413 -8.6438 0.0087 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260280935.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = 80.406890 kcal Electronic energy + Delta-G solvation = -13756.023285 eV Core-core repulsion = 11158.220442 eV Total energy + Delta-G solvation = -2597.802843 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.21762 -40.76186 -36.90822 -35.50676 -34.61868 -33.80564 -31.30552 -28.72987 -26.28346 -25.05905 -23.76323 -23.10307 -19.94781 -19.48135 -18.72610 -17.80081 -17.47865 -16.70965 -16.22131 -15.82523 -15.17304 -14.98515 -14.64556 -14.19826 -14.07752 -13.27618 -12.98964 -12.82586 -12.79073 -12.63480 -12.16847 -11.50303 -11.44396 -11.29455 -10.62272 -10.40435 -8.83477 -8.28739 -6.43217 -0.74668 -0.01475 0.90407 1.14048 1.44220 1.44551 1.57578 1.95488 2.40145 2.62477 2.68350 2.91278 3.06850 3.29261 3.49387 3.96137 4.26422 4.60645 4.77868 5.11592 5.31623 5.46238 5.66036 5.80559 5.83822 6.07477 6.60247 6.67454 7.19591 7.32579 8.82836 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.083284 B = 0.005579 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.117446 B = 5017.823715 C = 5338.797343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.286 3.714 10 N -0.676 5.676 11 C 0.541 3.459 12 N -0.538 5.538 13 C 0.231 3.769 14 C -0.109 4.109 15 O -0.092 6.092 16 N -0.276 5.276 17 C 0.140 3.860 18 C 0.093 3.907 19 N -0.538 5.538 20 H 0.269 0.731 21 H 0.001 0.999 22 H 0.001 0.999 23 H 0.414 0.586 24 H 0.220 0.780 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -12.878 0.017 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.599 4.599 8 H 0.093 0.907 9 C 0.164 3.836 10 N -0.312 5.312 11 C 0.183 3.817 12 N -0.261 5.261 13 C 0.054 3.946 14 C -0.171 4.171 15 O -0.099 6.099 16 N -0.020 5.020 17 C -0.063 4.063 18 C -0.051 4.051 19 N -0.266 5.266 20 H 0.078 0.922 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.251 0.749 24 H 0.237 0.763 25 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.991 -12.935 0.017 13.536 hybrid contribution 0.346 0.970 0.000 1.029 sum 4.337 -11.965 0.017 12.727 Atomic orbital electron populations 1.70094 1.07791 1.28476 1.49727 1.25883 0.95785 1.03261 0.93910 0.85205 0.78936 0.77878 0.77783 1.18367 1.20336 1.20345 1.21612 0.94164 0.90929 1.53165 0.90697 1.18628 0.87717 0.82093 0.95187 1.44810 1.10624 1.00014 1.75730 1.19514 0.84544 0.87296 0.90319 1.68245 1.14515 1.23327 1.20036 1.22905 1.01515 0.81626 0.88537 1.21679 0.98049 0.87485 1.09895 1.89090 1.24566 1.13563 1.82699 1.79866 0.88141 1.17491 1.16481 1.26641 1.02956 0.84773 0.91940 1.22267 0.90116 0.92914 0.99841 1.67205 1.38292 0.98023 1.23129 0.92156 0.98077 0.98070 0.74852 0.76316 0.71901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 13.29 21.45 0.28 -52.86 15 2 C 0.01 0.65 5.46 84.66 0.46 1.11 15 3 Si 0.98 41.73 29.54 68.60 2.03 43.76 15 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 5 H -0.28 -11.61 7.11 99.48 0.71 -10.91 15 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.56 -29.95 9.28 25.60 0.24 -29.71 15 8 H 0.07 3.76 7.60 -2.91 -0.02 3.73 15 9 C 0.29 14.84 5.39 85.63 0.46 15.30 15 10 N -0.68 -29.35 5.71 -354.65 -2.02 -31.38 15 11 C 0.54 21.67 8.42 261.41 2.20 23.87 15 12 N -0.54 -20.80 9.54 -197.51 -1.88 -22.69 15 13 C 0.23 6.81 11.35 84.88 0.96 7.77 15 14 C -0.11 -3.18 7.54 23.05 0.17 -3.00 15 15 O -0.09 -2.54 12.06 31.70 0.38 -2.16 15 16 N -0.28 -6.66 12.82 -52.91 -0.68 -7.34 15 17 C 0.14 2.86 12.32 87.15 1.07 3.93 15 18 C 0.09 2.75 7.55 41.64 0.31 3.06 15 19 N -0.54 -18.87 10.51 -187.84 -1.97 -20.84 15 20 H 0.27 14.48 8.31 -92.71 -0.77 13.71 15 21 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 22 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 23 H 0.41 16.50 8.43 -92.71 -0.78 15.72 15 24 H 0.22 4.45 8.06 -2.91 -0.02 4.43 15 25 H 0.27 2.51 8.06 -2.91 -0.02 2.48 15 Total: -1.00 -65.09 238.81 2.48 -62.61 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.46 Total: 8.56 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 5.89 Total: 22.33 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -6.27 Total: -135.10 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.38 Total: -2.16 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -65.09 2.48 -62.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280935.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.019 kcal (2) G-P(sol) polarization free energy of solvation -65.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds