Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36247 * 126.25510 * 2 1 4 4 N 1.30209 * 109.79891 * 180.02562 * 3 2 1 5 5 C 1.35319 * 109.32761 * 0.02562 * 4 3 2 6 6 C 1.36854 * 126.25626 * 180.02562 * 2 1 3 7 7 N 1.34044 * 134.27105 * 359.97438 * 6 2 1 8 8 C 1.30360 * 121.24900 * 180.02562 * 7 6 2 9 9 N 1.36100 * 122.11831 * 0.25798 * 8 7 6 10 10 C 1.37199 * 119.82732 * 179.71806 * 9 8 7 11 11 H 1.07996 * 119.99940 * 208.62596 * 10 9 8 12 12 C 1.39060 * 119.99972 * 28.62930 * 10 9 8 13 13 N 1.31265 * 119.99847 * 17.84123 * 12 10 9 14 14 Si 1.86797 * 119.99815 * 197.84487 * 12 10 9 15 15 H 1.48502 * 109.46994 * 60.00046 * 14 12 10 16 16 H 1.48504 * 109.46976 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47166 * 299.99536 * 14 12 10 18 18 C 1.35178 * 120.34385 * 359.46519 * 9 8 7 19 19 O 1.21874 * 120.89777 * 180.24814 * 18 9 8 20 20 H 1.08997 * 109.47330 * 269.97980 * 1 2 3 21 21 H 1.09006 * 109.47296 * 29.97623 * 1 2 3 22 22 H 1.08999 * 109.47165 * 149.97144 * 1 2 3 23 23 H 1.07997 * 125.10385 * 359.97438 * 3 2 1 24 24 H 1.07998 * 118.94329 * 179.97438 * 8 7 6 25 25 H 0.97000 * 119.99712 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0987 0.0000 4 7 3.5195 0.7298 -0.0005 5 6 3.5873 -0.6217 -0.0015 6 6 2.2743 -1.1036 -0.0005 7 7 2.0537 -2.4257 -0.0007 8 6 3.0417 -3.2762 -0.0007 9 7 4.3421 -2.8746 0.0047 10 6 5.3453 -3.8106 0.0103 11 1 6.2981 -3.5781 0.4623 12 6 5.1352 -5.0585 -0.5662 13 7 4.1432 -5.2340 -1.4078 14 14 6.2646 -6.4849 -0.1430 15 1 6.2024 -6.7491 1.3170 16 1 5.8305 -7.6966 -0.8837 17 1 7.6582 -6.1432 -0.5254 18 6 4.6505 -1.5585 -0.0007 19 8 5.8114 -1.1877 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5143 23 1 1.9255 2.1220 -0.0004 24 1 2.8213 -4.3334 -0.0004 25 1 3.9964 -6.1046 -1.8096 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260314528.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = 59.218218 kcal Electronic energy + Delta-G solvation = -14562.056601 eV Core-core repulsion = 11963.334949 eV Total energy + Delta-G solvation = -2598.721652 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.65570 -39.32047 -36.15812 -34.21676 -33.43289 -31.72034 -28.40906 -26.99461 -25.73495 -23.30953 -22.56190 -20.01679 -18.63895 -17.80603 -17.03593 -15.81994 -15.52782 -14.92749 -14.39432 -14.13707 -13.68993 -13.45469 -12.96477 -12.48224 -12.42944 -12.09360 -11.66745 -11.34915 -11.11496 -10.67024 -10.19836 -9.82713 -9.15349 -9.03707 -8.68734 -8.48000 -7.15966 -6.87625 -4.60199 1.84882 2.73670 2.97834 3.02565 3.03207 3.05734 3.54569 3.70629 4.25259 4.35077 4.94745 5.00626 5.07663 5.13256 5.38215 5.60319 5.68318 5.87131 6.44426 6.66898 7.02166 7.10393 7.40607 7.63490 7.97939 8.28934 8.44713 8.66839 9.08785 9.36448 10.07257 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.050978 B = 0.009265 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.119490 B = 3021.525924 C = 3480.674692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.475 5.475 3 C 0.182 3.818 4 N -0.435 5.435 5 C -0.141 4.141 6 C 0.270 3.730 7 N -0.573 5.573 8 C 0.387 3.613 9 N -0.351 5.351 10 C -0.339 4.339 11 H 0.120 0.880 12 C 0.047 3.953 13 N -0.851 5.851 14 Si 0.946 3.054 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.265 1.265 18 C 0.534 3.466 19 O -0.546 6.546 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.209 0.791 24 H 0.210 0.790 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 1.892 2.124 8.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.169 5.169 3 C -0.102 4.102 4 N -0.152 5.152 5 C -0.269 4.269 6 C 0.038 3.962 7 N -0.305 5.305 8 C 0.104 3.896 9 N -0.053 5.053 10 C -0.467 4.467 11 H 0.137 0.863 12 C -0.163 4.163 13 N -0.484 5.484 14 Si 0.770 3.230 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.189 1.189 18 C 0.332 3.668 19 O -0.425 6.425 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.104 0.896 23 H 0.226 0.774 24 H 0.226 0.774 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.850 2.378 1.984 8.439 hybrid contribution 0.244 -0.758 -0.143 0.810 sum -7.606 1.619 1.842 7.991 Atomic orbital electron populations 1.21854 0.76700 1.04104 1.02893 1.44604 1.06896 1.04908 1.60469 1.24933 0.84867 0.92345 1.08042 1.69892 1.18220 1.11058 1.16056 1.20329 0.92588 0.91822 1.22132 1.19110 0.88763 0.88128 1.00183 1.67302 1.32755 0.98460 1.32000 1.24862 0.77913 0.99216 0.87578 1.42662 1.07628 1.06471 1.48509 1.20091 0.96642 0.91497 1.38482 0.86280 1.25683 0.98016 0.99881 0.92705 1.69755 1.30314 1.25870 1.22474 0.85662 0.79840 0.78092 0.79430 1.18752 1.20123 1.18909 1.16157 0.88195 0.81548 0.80949 1.90727 1.20804 1.78654 1.52286 0.91331 0.90112 0.89593 0.77420 0.77407 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 11.18 59.85 0.67 1.70 15 2 N -0.47 -8.48 3.18 -125.03 -0.40 -8.88 15 3 C 0.18 3.20 12.52 -89.51 -1.12 2.08 15 4 N -0.43 -10.20 11.28 -11.75 -0.13 -10.33 15 5 C -0.14 -3.65 7.23 -84.40 -0.61 -4.26 15 6 C 0.27 6.17 8.02 -155.38 -1.25 4.92 15 7 N -0.57 -13.16 10.42 -13.24 -0.14 -13.30 15 8 C 0.39 9.29 10.28 -89.52 -0.92 8.37 15 9 N -0.35 -9.34 2.75 -65.43 -0.18 -9.52 15 10 C -0.34 -8.87 9.12 -14.84 -0.14 -9.00 15 11 H 0.12 3.18 7.59 -52.49 -0.40 2.78 15 12 C 0.05 1.11 4.98 -17.49 -0.09 1.02 15 13 N -0.85 -20.47 11.19 55.50 0.62 -19.85 15 14 Si 0.95 18.12 29.59 -169.99 -5.03 13.09 15 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 16 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 18 C 0.53 15.18 7.44 -14.75 -0.11 15.07 15 19 O -0.55 -16.94 16.97 5.03 0.09 -16.85 15 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.08 0.67 8.14 -51.93 -0.42 0.24 15 22 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.21 2.41 8.06 -52.49 -0.42 1.98 15 24 H 0.21 4.73 6.14 -52.49 -0.32 4.41 15 25 H 0.29 6.33 8.31 -40.82 -0.34 5.99 15 LS Contribution 232.00 15.07 3.50 3.50 Total: -1.00 -33.12 232.00 -6.78 -39.91 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -1.55 Total: 2.35 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: -3.56 Total: 19.89 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.23 Total: -61.88 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.09 Total: -16.85 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.12 -6.78 -39.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314528.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.125 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds