Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36247 * 126.25510 * 2 1 4 4 N 1.30209 * 109.79891 * 180.02562 * 3 2 1 5 5 C 1.35319 * 109.32761 * 0.02562 * 4 3 2 6 6 C 1.36854 * 126.25626 * 180.02562 * 2 1 3 7 7 N 1.34044 * 134.27105 * 359.97438 * 6 2 1 8 8 C 1.30360 * 121.24900 * 180.02562 * 7 6 2 9 9 N 1.36100 * 122.11831 * 0.25798 * 8 7 6 10 10 C 1.37199 * 119.82732 * 179.71806 * 9 8 7 11 11 H 1.07996 * 119.99940 * 208.62596 * 10 9 8 12 12 C 1.39060 * 119.99972 * 28.62930 * 10 9 8 13 13 N 1.31265 * 119.99847 * 17.84123 * 12 10 9 14 14 Si 1.86797 * 119.99815 * 197.84487 * 12 10 9 15 15 H 1.48502 * 109.46994 * 60.00046 * 14 12 10 16 16 H 1.48504 * 109.46976 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47166 * 299.99536 * 14 12 10 18 18 C 1.35178 * 120.34385 * 359.46519 * 9 8 7 19 19 O 1.21874 * 120.89777 * 180.24814 * 18 9 8 20 20 H 1.08997 * 109.47330 * 269.97980 * 1 2 3 21 21 H 1.09006 * 109.47296 * 29.97623 * 1 2 3 22 22 H 1.08999 * 109.47165 * 149.97144 * 1 2 3 23 23 H 1.07997 * 125.10385 * 359.97438 * 3 2 1 24 24 H 1.07998 * 118.94329 * 179.97438 * 8 7 6 25 25 H 0.97000 * 119.99712 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0987 0.0000 4 7 3.5195 0.7298 -0.0005 5 6 3.5873 -0.6217 -0.0015 6 6 2.2743 -1.1036 -0.0005 7 7 2.0537 -2.4257 -0.0007 8 6 3.0417 -3.2762 -0.0007 9 7 4.3421 -2.8746 0.0047 10 6 5.3453 -3.8106 0.0103 11 1 6.2981 -3.5781 0.4623 12 6 5.1352 -5.0585 -0.5662 13 7 4.1432 -5.2340 -1.4078 14 14 6.2646 -6.4849 -0.1430 15 1 6.2024 -6.7491 1.3170 16 1 5.8305 -7.6966 -0.8837 17 1 7.6582 -6.1432 -0.5254 18 6 4.6505 -1.5585 -0.0007 19 8 5.8114 -1.1877 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5143 23 1 1.9255 2.1220 -0.0004 24 1 2.8213 -4.3334 -0.0004 25 1 3.9964 -6.1046 -1.8096 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260314528.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = 37.327111 kcal Electronic energy + Delta-G solvation = -14563.005871 eV Core-core repulsion = 11963.334949 eV Total energy + Delta-G solvation = -2599.670922 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.37254 -41.16740 -38.18473 -36.06209 -34.91733 -33.63434 -30.23424 -28.43872 -27.40511 -25.12421 -24.36641 -21.69574 -20.44011 -19.52678 -18.82425 -17.66383 -17.24247 -16.61196 -16.03320 -15.80729 -15.46076 -15.09570 -14.81474 -13.95035 -13.69775 -13.58767 -13.40971 -13.11331 -12.81765 -12.15839 -11.89886 -11.64956 -11.13218 -10.83991 -10.40165 -10.27201 -9.00392 -8.71950 -6.58040 0.07256 0.82095 1.40476 1.47978 1.54727 1.57552 1.91504 2.04978 2.44393 2.51437 3.12185 3.35079 3.57238 3.88783 4.13199 4.23607 4.53024 4.69500 4.80876 4.96647 5.13271 5.39272 5.51969 6.03993 6.10965 6.42011 6.66468 6.91207 7.18302 7.37421 8.25973 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.050978 B = 0.009265 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.119490 B = 3021.525924 C = 3480.674692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.465 5.465 3 C 0.231 3.769 4 N -0.496 5.496 5 C -0.174 4.174 6 C 0.255 3.745 7 N -0.555 5.555 8 C 0.379 3.621 9 N -0.354 5.354 10 C -0.384 4.384 11 H 0.099 0.901 12 C 0.024 3.976 13 N -0.868 5.868 14 Si 1.018 2.982 15 H -0.252 1.252 16 H -0.256 1.256 17 H -0.272 1.272 18 C 0.500 3.500 19 O -0.603 6.603 20 H 0.090 0.910 21 H 0.129 0.871 22 H 0.079 0.921 23 H 0.278 0.722 24 H 0.220 0.780 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 2.098 2.093 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.157 5.157 3 C -0.053 4.053 4 N -0.215 5.215 5 C -0.299 4.299 6 C 0.022 3.978 7 N -0.286 5.286 8 C 0.096 3.904 9 N -0.056 5.056 10 C -0.511 4.511 11 H 0.116 0.884 12 C -0.184 4.184 13 N -0.500 5.500 14 Si 0.836 3.164 15 H -0.176 1.176 16 H -0.180 1.180 17 H -0.197 1.197 18 C 0.301 3.699 19 O -0.488 6.488 20 H 0.109 0.891 21 H 0.147 0.853 22 H 0.098 0.902 23 H 0.293 0.707 24 H 0.236 0.764 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.544 2.582 1.949 11.029 hybrid contribution 0.816 -0.666 -0.169 1.067 sum -9.727 1.916 1.779 10.073 Atomic orbital electron populations 1.22363 0.72506 1.06303 1.05063 1.45072 1.09153 1.02992 1.58515 1.26327 0.83156 0.94438 1.01417 1.69866 1.21717 1.09926 1.19979 1.20378 0.93128 0.93094 1.23336 1.19283 0.89048 0.88812 1.00692 1.67324 1.32014 0.98768 1.30510 1.25094 0.77304 0.99880 0.88125 1.42763 1.08530 1.06086 1.48253 1.20197 0.96768 0.92937 1.41220 0.88365 1.26585 0.99368 1.01047 0.91402 1.69768 1.30995 1.27206 1.22044 0.84662 0.77055 0.74806 0.79859 1.17637 1.17979 1.19738 1.16814 0.88545 0.82762 0.81758 1.90641 1.22642 1.79532 1.55943 0.89127 0.85258 0.90173 0.70720 0.76449 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 11.18 127.77 1.43 2.86 15 2 N -0.47 -15.00 3.18 -549.48 -1.75 -16.74 15 3 C 0.23 7.25 12.52 179.96 2.25 9.50 15 4 N -0.50 -23.05 11.28 -191.07 -2.16 -25.21 15 5 C -0.17 -9.23 7.23 39.85 0.29 -8.94 15 6 C 0.26 11.49 8.02 133.46 1.07 12.56 15 7 N -0.56 -25.43 10.42 -195.79 -2.04 -27.47 15 8 C 0.38 18.62 10.28 179.96 1.85 20.47 15 9 N -0.35 -19.84 2.75 -478.83 -1.32 -21.16 15 10 C -0.38 -21.14 9.12 84.05 0.77 -20.38 15 11 H 0.10 5.66 7.59 -2.91 -0.02 5.64 15 12 C 0.02 1.17 4.98 84.97 0.42 1.59 15 13 N -0.87 -41.66 11.19 21.67 0.24 -41.42 15 14 Si 1.02 36.90 29.59 68.60 2.03 38.93 15 15 H -0.25 -8.72 7.11 99.48 0.71 -8.01 15 16 H -0.26 -8.41 7.11 99.48 0.71 -7.71 15 17 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 18 C 0.50 30.22 7.44 85.03 0.63 30.85 15 19 O -0.60 -40.35 16.97 -4.91 -0.08 -40.43 15 20 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.13 1.23 8.14 -2.38 -0.02 1.21 15 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.28 4.44 8.06 -2.91 -0.02 4.42 15 24 H 0.22 10.05 6.14 -2.91 -0.02 10.03 15 25 H 0.30 12.86 8.31 -92.71 -0.77 12.09 15 Total: -1.00 -78.73 232.00 4.87 -73.86 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.23 Total: 11.14 kcal Atomic # 6 Polarization: 39.79 SS G_CDS: 8.71 Total: 48.50 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -7.02 Total: -132.00 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.08 Total: -40.43 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -78.73 4.87 -73.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314528.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.185 kcal (2) G-P(sol) polarization free energy of solvation -78.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds