Wall clock time and date at job start Mon Mar 30 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.30133 * 124.99621 * 304.70113 * 10 9 7 12 12 C 1.35499 * 109.44571 * 179.88838 * 11 10 9 13 13 C 1.40628 * 107.11060 * 0.36007 * 12 11 10 14 14 N 1.32819 * 119.06820 * 179.74997 * 13 12 11 15 15 C 1.31643 * 120.59342 * 0.06910 * 14 13 12 16 16 N 1.32066 * 122.44211 * 359.92755 * 15 14 13 17 17 C 1.32727 * 121.22794 * 0.03856 * 16 15 14 18 18 O 1.35473 * 120.75801 * 180.02562 * 17 16 15 19 19 N 1.36304 * 125.00129 * 124.99510 * 10 9 7 20 20 H 0.97006 * 126.27257 * 359.96809 * 19 10 9 21 21 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 23 23 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 24 24 H 1.07999 * 118.78118 * 179.97438 * 15 14 13 25 25 H 0.96699 * 113.99685 * 269.97667 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 3.1803 -3.8200 -0.8583 12 6 3.8714 -4.9446 -0.5522 13 6 3.2784 -5.4942 0.5984 14 7 3.7734 -6.6176 1.1056 15 6 4.8054 -7.2094 0.5420 16 7 5.3939 -6.7299 -0.5387 17 6 4.9683 -5.6131 -1.1159 18 8 5.5788 -5.1300 -2.2246 19 7 2.2471 -4.6526 0.9307 20 1 1.6410 -4.7560 1.6811 21 1 -0.4851 -0.8400 -0.0004 22 1 0.6205 -2.5547 0.8933 23 1 0.6280 -2.5591 -0.8867 24 1 5.1844 -8.1214 0.9791 25 1 6.3043 -4.5182 -2.0390 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260329620.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:57 Heat of formation + Delta-G solvation = 46.494708 kcal Electronic energy + Delta-G solvation = -14037.169825 eV Core-core repulsion = 11437.896440 eV Total energy + Delta-G solvation = -2599.273385 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.35224 -39.32288 -37.34668 -33.91093 -33.13588 -31.95430 -30.41034 -27.86416 -24.13039 -23.65442 -22.78316 -20.68883 -19.36885 -18.26740 -17.27855 -16.89373 -16.25542 -15.47482 -14.90707 -14.37691 -13.86198 -13.56405 -13.06541 -12.30234 -12.18363 -11.98970 -11.13667 -11.03974 -10.85900 -10.75490 -10.16505 -10.09018 -9.42213 -9.09574 -8.95464 -8.58267 -8.11283 -6.58107 -4.31005 0.69788 1.28263 2.66836 3.08785 3.37494 3.40354 3.41514 3.58325 3.88585 4.20436 4.40859 4.42830 4.69903 5.11316 5.18736 5.43227 5.77914 6.02219 6.39366 6.62623 6.78578 6.92856 7.33078 7.53607 7.75376 8.10671 8.20138 8.24710 8.61513 9.37224 10.81492 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.044121 B = 0.007297 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.465343 B = 3836.298177 C = 4229.030843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 1.075 2.925 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.592 4.592 8 H 0.060 0.940 9 C 0.075 3.925 10 C 0.354 3.646 11 N -0.464 5.464 12 C -0.053 4.053 13 C 0.268 3.732 14 N -0.519 5.519 15 C 0.313 3.687 16 N -0.545 5.545 17 C 0.414 3.586 18 O -0.466 6.466 19 N -0.584 5.584 20 H 0.429 0.571 21 H 0.268 0.732 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.206 0.794 25 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -9.427 2.100 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.902 3.098 4 H -0.210 1.210 5 H -0.206 1.206 6 H -0.213 1.213 7 C -0.630 4.630 8 H 0.079 0.921 9 C 0.037 3.963 10 C 0.088 3.912 11 N -0.183 5.183 12 C -0.179 4.179 13 C 0.023 3.977 14 N -0.240 5.240 15 C 0.023 3.977 16 N -0.273 5.273 17 C 0.219 3.781 18 O -0.273 6.273 19 N -0.198 5.198 20 H 0.269 0.731 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.222 0.778 25 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.807 -8.363 1.447 10.879 hybrid contribution -0.195 -1.394 0.925 1.684 sum 6.611 -9.756 2.372 12.022 Atomic orbital electron populations 1.70837 1.06829 1.30541 1.45832 1.25922 0.96354 1.02771 0.93185 0.83446 0.74851 0.74703 0.76837 1.21016 1.20602 1.21348 1.21740 0.94842 0.89647 1.56815 0.92150 1.18288 0.91260 0.87894 0.98870 1.25093 0.95117 0.88433 0.82567 1.70653 1.06907 1.14674 1.26113 1.20826 1.01938 0.97700 0.97456 1.18966 0.92245 0.91866 0.94612 1.67180 1.14007 1.07947 1.34878 1.24391 0.87381 0.98111 0.87796 1.67952 1.33906 1.13355 1.12122 1.18589 0.87699 0.87468 0.84387 1.84660 1.52300 1.64767 1.25568 1.43183 1.27306 1.20979 1.28333 0.73144 0.92158 0.94689 0.92885 0.77812 0.73300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.57 13.65 55.43 0.76 -24.81 15 2 C 0.02 0.60 5.46 -17.82 -0.10 0.50 15 3 Si 1.07 24.07 29.90 -169.99 -5.08 18.99 15 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.59 -15.72 9.05 -34.44 -0.31 -16.03 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 15 9 C 0.08 1.75 4.91 -29.04 -0.14 1.61 15 10 C 0.35 7.51 7.32 -154.56 -1.13 6.37 15 11 N -0.46 -10.36 11.21 -8.07 -0.09 -10.45 15 12 C -0.05 -1.04 7.25 -84.58 -0.61 -1.65 15 13 C 0.27 4.93 8.51 -155.82 -1.33 3.60 15 14 N -0.52 -8.43 10.47 -13.88 -0.15 -8.58 15 15 C 0.31 4.39 12.25 -92.05 -1.13 3.26 15 16 N -0.55 -8.58 10.44 -14.40 -0.15 -8.73 15 17 C 0.41 7.22 7.89 -16.40 -0.13 7.09 15 18 O -0.47 -7.24 13.58 -18.11 -0.25 -7.49 15 19 N -0.58 -10.36 6.20 -9.47 -0.06 -10.42 15 20 H 0.43 6.13 8.96 -40.82 -0.37 5.77 15 21 H 0.27 7.37 7.22 -40.82 -0.29 7.07 15 22 H 0.04 0.77 8.00 -51.93 -0.42 0.36 15 23 H 0.05 1.28 8.01 -51.93 -0.42 0.86 15 24 H 0.21 1.88 8.06 -52.49 -0.42 1.46 15 25 H 0.41 4.23 9.06 45.56 0.41 4.64 15 LS Contribution 236.48 15.07 3.56 3.56 Total: -1.00 -32.12 236.48 -7.04 -39.16 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -0.70 Total: 4.01 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -4.88 Total: 4.76 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.31 Total: -62.98 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.25 Total: -7.49 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.99 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.12 -7.04 -39.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260329620.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.652 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds