Wall clock time and date at job start Mon Mar 30 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48505 * 109.46818 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47138 * 299.99644 * 3 2 1 6 6 H 1.48499 * 109.47007 * 60.00006 * 3 2 1 7 7 C 1.38657 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00111 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99517 * 185.06228 * 9 7 2 11 11 C 1.38801 * 119.91435 * 354.38394 * 10 9 7 12 12 C 1.38110 * 119.90108 * 179.97438 * 11 10 9 13 13 C 1.38072 * 120.03475 * 0.34263 * 12 11 10 14 14 C 1.39199 * 120.36272 * 359.49612 * 13 12 11 15 15 C 1.38271 * 119.73159 * 0.39976 * 14 13 12 16 16 C 1.50760 * 121.43815 * 180.02562 * 15 14 13 17 17 C 1.53073 * 109.68714 * 342.23052 * 16 15 14 18 18 C 1.53408 * 108.28985 * 48.15079 * 17 16 15 19 19 O 1.35856 * 118.47135 * 179.97438 * 14 13 12 20 20 H 0.96999 * 119.99670 * 0.02562 * 1 2 3 21 21 H 1.07996 * 120.04677 * 359.96955 * 11 10 9 22 22 H 1.08000 * 119.98430 * 180.02562 * 12 11 10 23 23 H 1.08003 * 119.82380 * 179.74923 * 13 12 11 24 24 H 1.09002 * 109.43216 * 102.29747 * 16 15 14 25 25 H 1.09002 * 109.43494 * 222.16244 * 16 15 14 26 26 H 1.09005 * 109.69689 * 167.84731 * 17 16 15 27 27 H 1.08993 * 109.70320 * 288.40840 * 17 16 15 28 28 H 1.09003 * 109.68523 * 55.02218 * 18 17 16 29 29 H 1.08998 * 109.68459 * 175.54621 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3963 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2009 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1078 11 6 3.4561 -3.4359 0.0934 12 6 4.2038 -4.5919 0.2031 13 6 3.5730 -5.8145 0.3198 14 6 2.1832 -5.8903 0.3382 15 6 1.4320 -4.7345 0.2307 16 6 -0.0751 -4.7719 0.2469 17 6 -0.5589 -6.1932 -0.0513 18 6 0.2278 -7.1657 0.8368 19 8 1.6028 -7.1132 0.4539 20 1 -0.4849 0.8401 -0.0004 21 1 3.9492 -2.4800 -0.0035 22 1 5.2825 -4.5400 0.1925 23 1 4.1611 -6.7167 0.4013 24 1 -0.4349 -4.4647 1.2289 25 1 -0.4629 -4.0904 -0.5103 26 1 -1.6233 -6.2729 0.1697 27 1 -0.3830 -6.4287 -1.1008 28 1 0.1263 -6.8728 1.8818 29 1 -0.1534 -8.1777 0.7005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365060.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:32 Heat of formation + Delta-G solvation = -69.519117 kcal Electronic energy + Delta-G solvation = -14687.891874 eV Core-core repulsion = 12154.835344 eV Total energy + Delta-G solvation = -2533.056530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.61378 -39.87506 -37.31166 -35.09821 -34.17707 -31.51642 -30.06131 -27.43370 -26.48190 -24.55788 -23.01556 -21.13907 -19.94439 -18.86019 -17.69930 -17.18040 -16.71970 -16.05731 -15.88830 -15.53336 -15.37111 -14.88018 -14.37559 -14.14163 -13.77258 -13.62430 -13.28683 -12.81820 -12.68626 -12.22568 -12.11390 -12.03760 -11.61163 -11.41589 -11.12746 -10.78500 -9.23978 -8.86875 -8.48695 -6.16655 0.52928 0.68897 1.35112 1.43247 1.53304 2.15551 2.42059 2.79240 3.12273 3.42741 3.79783 3.87806 3.98468 4.25603 4.31563 4.33395 4.53601 4.63321 4.68242 4.77364 4.90165 4.98833 5.13592 5.15462 5.28921 5.44773 5.65237 5.70499 5.94526 6.01277 6.57685 6.96543 7.75147 8.74257 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.040773 B = 0.008548 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.565996 B = 3274.805225 C = 3914.730379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.218 6.218 10 C 0.142 3.858 11 C -0.277 4.277 12 C -0.038 4.038 13 C -0.226 4.226 14 C 0.163 3.837 15 C -0.247 4.247 16 C -0.060 4.060 17 C -0.147 4.147 18 C 0.057 3.943 19 O -0.322 6.322 20 H 0.273 0.727 21 H 0.123 0.877 22 H 0.157 0.843 23 H 0.148 0.852 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 -10.156 1.306 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.124 6.124 10 C 0.091 3.909 11 C -0.296 4.296 12 C -0.056 4.056 13 C -0.244 4.244 14 C 0.117 3.883 15 C -0.249 4.249 16 C -0.097 4.097 17 C -0.185 4.185 18 C -0.017 4.017 19 O -0.236 6.236 20 H 0.082 0.918 21 H 0.141 0.859 22 H 0.175 0.825 23 H 0.166 0.834 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.906 -10.171 1.257 10.653 hybrid contribution -0.099 1.314 -0.041 1.318 sum 2.806 -8.857 1.216 9.370 Atomic orbital electron populations 1.70186 1.07966 1.28739 1.48675 1.26565 0.96846 1.02610 0.95745 0.84526 0.78294 0.74833 0.78537 1.17471 1.19353 1.19360 1.21910 0.92642 0.81381 1.53216 0.88053 1.83921 1.35661 1.12260 1.80579 1.19541 0.91311 0.87323 0.92772 1.21231 0.92955 1.00411 1.15028 1.20925 1.00426 0.90226 0.94017 1.20543 0.90898 0.99125 1.13879 1.18438 0.92127 0.82924 0.94763 1.19153 0.96837 0.90822 1.18130 1.20071 0.90449 0.98149 1.01047 1.22204 1.02109 0.93222 1.00929 1.23245 0.77882 1.02475 0.98090 1.85927 1.28187 1.25247 1.84240 0.91827 0.85905 0.82543 0.83411 0.92535 0.93310 0.87376 0.91002 0.91663 0.83822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 13.67 21.61 0.30 -55.68 15 2 C -0.02 -1.13 5.49 84.83 0.47 -0.66 15 3 Si 1.02 42.82 29.55 68.60 2.03 44.84 15 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 15 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 15 7 C -0.42 -24.26 9.48 67.92 0.64 -23.62 15 8 H 0.10 5.47 5.19 -2.91 -0.02 5.45 15 9 O -0.22 -13.15 8.91 -22.78 -0.20 -13.36 15 10 C 0.14 7.29 6.61 22.61 0.15 7.44 15 11 C -0.28 -12.46 9.16 22.37 0.20 -12.26 15 12 C -0.04 -1.37 10.03 22.20 0.22 -1.14 15 13 C -0.23 -7.92 9.93 22.46 0.22 -7.69 15 14 C 0.16 6.32 6.47 22.51 0.15 6.47 15 15 C -0.25 -11.12 5.76 -19.63 -0.11 -11.23 15 16 C -0.06 -2.45 5.47 29.89 0.16 -2.28 15 17 C -0.15 -4.22 6.19 30.76 0.19 -4.03 15 18 C 0.06 1.45 7.03 72.12 0.51 1.96 15 19 O -0.32 -10.56 10.27 -91.93 -0.94 -11.51 15 20 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 21 H 0.12 5.54 5.62 -2.91 -0.02 5.52 15 22 H 0.16 4.24 8.06 -2.91 -0.02 4.22 15 23 H 0.15 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 25 H 0.05 2.27 7.84 -2.39 -0.02 2.25 15 26 H 0.11 2.42 8.14 -2.38 -0.02 2.41 15 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 29 H 0.14 2.41 8.14 -2.39 -0.02 2.39 15 Total: -1.00 -70.38 249.16 5.14 -65.25 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.16 Total: 17.50 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 2.80 Total: -47.05 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.30 Total: -55.68 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.15 Total: -24.86 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -70.38 5.14 -65.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365060.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.270 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds