Wall clock time and date at job start Mon Mar 30 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38325 * 120.34901 * 2 1 4 4 C 1.37699 * 120.53956 * 179.85664 * 3 2 1 5 5 C 1.39595 * 121.05211 * 0.02921 * 4 3 2 6 6 C 1.38888 * 117.80940 * 0.28924 * 5 4 3 7 7 C 1.38027 * 120.35408 * 180.02562 * 2 1 3 8 8 S 1.77432 * 108.28545 * 179.28153 * 6 5 4 9 9 C 1.83298 * 96.62467 * 344.99194 * 8 6 5 10 10 C 1.50884 * 126.83610 * 180.64992 * 5 4 3 11 11 H 1.09000 * 109.28033 * 320.75290 * 10 5 4 12 12 C 1.50700 * 109.28393 * 80.28227 * 10 5 4 13 13 H 1.08000 * 120.00058 * 0.02562 * 12 10 5 14 14 C 1.37881 * 119.99760 * 179.97438 * 12 10 5 15 15 N 1.31515 * 119.99667 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99884 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46662 * 120.00417 * 16 14 12 19 19 H 1.48502 * 109.47243 * 240.00340 * 16 14 12 20 20 H 1.08999 * 109.47313 * 90.00132 * 1 2 3 21 21 H 1.09005 * 109.47289 * 210.00362 * 1 2 3 22 22 H 1.09006 * 109.47337 * 329.99772 * 1 2 3 23 23 H 1.08000 * 119.73254 * 359.57960 * 3 2 1 24 24 H 1.07997 * 119.47711 * 179.97438 * 4 3 2 25 25 H 1.08004 * 119.91888 * 359.97438 * 7 2 1 26 26 H 1.08998 * 111.10100 * 266.86850 * 9 8 6 27 27 H 1.09005 * 111.13543 * 142.77765 * 9 8 6 28 28 H 0.97002 * 119.99606 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1937 0.0000 4 6 3.5829 1.1983 0.0030 5 6 4.3069 0.0048 0.0054 6 6 3.5927 -1.1864 -0.0014 7 6 2.2045 -1.1911 -0.0005 8 16 4.7513 -2.5301 -0.0175 9 6 6.2193 -1.5379 -0.4871 10 6 5.8084 -0.1423 0.0225 11 1 6.2520 0.6189 -0.6193 12 6 6.3105 0.0409 1.4315 13 1 5.6133 0.2426 2.2313 14 6 7.6599 -0.0499 1.6998 15 7 8.5088 -0.2960 0.7259 16 14 8.2822 0.1765 3.4465 17 1 7.1342 0.4404 4.3507 18 1 8.9843 -1.0562 3.8854 19 1 9.2228 1.3248 3.4920 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 1.6672 2.1298 -0.0069 24 1 4.1112 2.1402 0.0025 25 1 1.6689 -2.1290 -0.0005 26 1 6.3615 -1.5349 -1.5677 27 1 7.1141 -1.8943 0.0233 28 1 9.4582 -0.3595 0.9146 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260378224.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:34 Heat of formation + Delta-G solvation = 11.658682 kcal Electronic energy + Delta-G solvation = -12436.348778 eV Core-core repulsion = 10349.565252 eV Total energy + Delta-G solvation = -2086.783525 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.81979 -35.04897 -32.31554 -30.39825 -29.83535 -25.98819 -25.42305 -22.33092 -21.68431 -19.76955 -16.55842 -16.42574 -14.98065 -14.89322 -14.36142 -13.69132 -13.59918 -13.24577 -12.76796 -12.36688 -11.95934 -11.84334 -11.53347 -11.22648 -11.00849 -10.92016 -10.59557 -10.35015 -9.77390 -9.46888 -9.25466 -8.94212 -8.47480 -7.90980 -6.55692 -6.15143 -4.25753 1.88433 1.96595 2.62073 3.22829 3.31436 3.34327 3.37248 4.22836 4.39246 5.10418 5.25446 5.34029 5.56303 5.60864 5.78429 5.95277 6.04405 6.11898 6.33774 6.34965 6.51836 6.65424 6.90675 7.01373 7.09145 7.24828 7.43306 7.59837 7.77171 8.10525 8.76653 9.39697 10.87303 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.036205 B = 0.009535 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.191788 B = 2935.700865 C = 3296.561207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.100 4.100 5 C -0.059 4.059 6 C -0.075 4.075 7 C -0.097 4.097 8 S -0.204 6.204 9 C -0.043 4.043 10 C 0.068 3.932 11 H 0.052 0.948 12 C -0.498 4.498 13 H 0.062 0.938 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.283 1.283 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.062 0.938 27 H 0.131 0.869 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 0.545 -2.177 9.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.120 4.120 5 C -0.064 4.064 6 C -0.187 4.187 7 C -0.122 4.122 8 S 0.038 5.962 9 C -0.191 4.191 10 C 0.049 3.951 11 H 0.070 0.930 12 C -0.536 4.536 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.209 1.209 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.345 -0.825 -1.984 9.589 hybrid contribution 0.595 1.397 0.724 1.682 sum -8.750 0.572 -1.260 8.859 Atomic orbital electron populations 1.20650 0.91516 1.02161 1.01658 1.19576 0.95263 0.92853 1.02402 1.20677 0.93888 0.97018 1.03334 1.20798 0.93298 0.97431 1.00439 1.21565 0.97056 0.92187 0.95575 1.22086 0.95838 0.96436 1.04373 1.20113 0.91192 0.97407 1.03452 1.85393 1.06883 1.15763 1.88150 1.24574 0.96008 0.97330 1.01187 1.18298 0.85124 0.92989 0.98733 0.93010 1.20971 0.92038 1.48611 0.91941 0.92001 1.24969 0.96626 0.94719 0.97655 1.69893 1.02861 1.48741 1.31513 0.86391 0.78859 0.77844 0.84198 1.19568 1.20761 1.20864 0.91782 0.92020 0.91953 0.86745 0.86440 0.86735 0.91947 0.85112 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.03 36.00 0.36 -0.87 15 2 C -0.10 -1.62 5.88 -104.67 -0.62 -2.23 15 3 C -0.13 -2.17 9.67 -39.75 -0.38 -2.55 15 4 C -0.10 -1.96 9.97 -39.27 -0.39 -2.35 15 5 C -0.06 -1.32 5.16 -103.79 -0.54 -1.86 15 6 C -0.07 -1.61 6.48 -39.13 -0.25 -1.87 15 7 C -0.10 -1.79 9.73 -39.44 -0.38 -2.18 15 8 S -0.20 -4.52 23.05 -107.50 -2.48 -7.00 15 9 C -0.04 -1.02 6.62 37.76 0.25 -0.77 15 10 C 0.07 1.68 2.52 -92.23 -0.23 1.45 15 11 H 0.05 1.35 8.14 -51.93 -0.42 0.93 15 12 C -0.50 -13.37 8.51 -34.44 -0.29 -13.66 15 13 H 0.06 1.72 7.73 -52.49 -0.41 1.31 15 14 C 0.06 1.65 5.07 -17.82 -0.09 1.56 15 15 N -0.89 -24.20 11.55 55.43 0.64 -23.56 15 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 15 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.68 8.09 -51.93 -0.42 0.26 15 22 H 0.06 0.66 8.09 -51.93 -0.42 0.24 15 23 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 24 H 0.12 2.17 8.06 -52.49 -0.42 1.75 15 25 H 0.11 1.88 8.06 -52.48 -0.42 1.45 15 26 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 27 H 0.13 3.37 6.10 -51.93 -0.32 3.05 15 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 LS Contribution 252.03 15.07 3.80 3.80 Total: -1.00 -27.60 252.03 -8.86 -36.46 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.23 Total: -0.30 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -2.57 Total: -25.32 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.64 Total: -23.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -4.52 SS G_CDS: -2.48 Total: -7.00 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.60 -8.86 -36.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378224.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.122 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds