Wall clock time and date at job start Mon Mar 30 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38325 * 120.34901 * 2 1 4 4 C 1.37699 * 120.53956 * 179.85664 * 3 2 1 5 5 C 1.39595 * 121.05211 * 0.02921 * 4 3 2 6 6 C 1.38888 * 117.80940 * 0.28924 * 5 4 3 7 7 C 1.38027 * 120.35408 * 180.02562 * 2 1 3 8 8 S 1.77432 * 108.28545 * 179.28153 * 6 5 4 9 9 C 1.83298 * 96.62467 * 344.99194 * 8 6 5 10 10 C 1.50884 * 126.83610 * 180.64992 * 5 4 3 11 11 H 1.09000 * 109.28033 * 320.75290 * 10 5 4 12 12 C 1.50700 * 109.28393 * 80.28227 * 10 5 4 13 13 H 1.08000 * 120.00058 * 0.02562 * 12 10 5 14 14 C 1.37881 * 119.99760 * 179.97438 * 12 10 5 15 15 N 1.31515 * 119.99667 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99884 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46662 * 120.00417 * 16 14 12 19 19 H 1.48502 * 109.47243 * 240.00340 * 16 14 12 20 20 H 1.08999 * 109.47313 * 90.00132 * 1 2 3 21 21 H 1.09005 * 109.47289 * 210.00362 * 1 2 3 22 22 H 1.09006 * 109.47337 * 329.99772 * 1 2 3 23 23 H 1.08000 * 119.73254 * 359.57960 * 3 2 1 24 24 H 1.07997 * 119.47711 * 179.97438 * 4 3 2 25 25 H 1.08004 * 119.91888 * 359.97438 * 7 2 1 26 26 H 1.08998 * 111.10100 * 266.86850 * 9 8 6 27 27 H 1.09005 * 111.13543 * 142.77765 * 9 8 6 28 28 H 0.97002 * 119.99606 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1937 0.0000 4 6 3.5829 1.1983 0.0030 5 6 4.3069 0.0048 0.0054 6 6 3.5927 -1.1864 -0.0014 7 6 2.2045 -1.1911 -0.0005 8 16 4.7513 -2.5301 -0.0175 9 6 6.2193 -1.5379 -0.4871 10 6 5.8084 -0.1423 0.0225 11 1 6.2520 0.6189 -0.6193 12 6 6.3105 0.0409 1.4315 13 1 5.6133 0.2426 2.2313 14 6 7.6599 -0.0499 1.6998 15 7 8.5088 -0.2960 0.7259 16 14 8.2822 0.1765 3.4465 17 1 7.1342 0.4404 4.3507 18 1 8.9843 -1.0562 3.8854 19 1 9.2228 1.3248 3.4920 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 1.6672 2.1298 -0.0069 24 1 4.1112 2.1402 0.0025 25 1 1.6689 -2.1290 -0.0005 26 1 6.3615 -1.5349 -1.5677 27 1 7.1141 -1.8943 0.0233 28 1 9.4582 -0.3595 0.9146 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378224.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:34 Heat of formation + Delta-G solvation = -1.890235 kcal Electronic energy + Delta-G solvation = -12436.936303 eV Core-core repulsion = 10349.565252 eV Total energy + Delta-G solvation = -2087.371050 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31599 -36.79931 -34.07843 -31.87900 -31.42269 -27.52606 -27.25970 -23.90201 -23.28883 -21.37331 -18.53129 -18.09854 -16.78798 -16.38982 -15.96360 -15.36104 -15.15611 -14.48755 -14.32153 -14.00669 -13.63615 -13.32134 -12.97858 -12.77083 -12.73576 -12.64350 -12.34474 -11.98439 -11.54727 -11.43057 -11.03375 -10.63892 -10.32938 -9.40990 -8.36279 -8.08779 -6.36601 0.38926 0.49068 0.93191 1.37162 1.40264 1.51483 1.55435 2.36961 2.82536 3.05109 3.93159 4.05281 4.12725 4.37034 4.43735 4.50430 4.63533 4.77906 4.92462 4.95470 5.08940 5.18608 5.28846 5.37332 5.47655 5.67043 5.68909 5.76395 6.06578 6.16720 6.67387 7.31556 8.82930 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.036205 B = 0.009535 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.191788 B = 2935.700865 C = 3296.561207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.096 4.096 6 C -0.095 4.095 7 C -0.103 4.103 8 S -0.205 6.205 9 C -0.041 4.041 10 C 0.068 3.932 11 H 0.024 0.976 12 C -0.513 4.513 13 H 0.046 0.954 14 C 0.021 3.979 15 N -0.913 5.913 16 Si 0.958 3.042 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.275 1.275 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.154 0.846 24 H 0.120 0.880 25 H 0.136 0.864 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 1.095 -1.680 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.101 4.101 6 C -0.207 4.207 7 C -0.127 4.127 8 S 0.037 5.963 9 C -0.190 4.190 10 C 0.049 3.951 11 H 0.042 0.958 12 C -0.551 4.551 13 H 0.064 0.936 14 C -0.179 4.179 15 N -0.552 5.552 16 Si 0.783 3.217 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.200 1.200 20 H 0.102 0.898 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.172 0.828 24 H 0.138 0.862 25 H 0.153 0.847 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.853 -0.265 -1.493 11.950 hybrid contribution 1.241 1.271 0.538 1.856 sum -10.613 1.006 -0.956 10.703 Atomic orbital electron populations 1.20760 0.87679 1.03885 1.03431 1.20157 0.97822 0.91611 0.99124 1.21121 0.92642 0.99118 1.01105 1.21014 0.94869 0.96578 1.00727 1.21421 0.95790 0.93956 0.98966 1.22243 0.96994 0.95199 1.06287 1.20505 0.89919 0.99447 1.02809 1.85176 1.06462 1.16019 1.88686 1.24298 0.96057 0.97399 1.01204 1.18175 0.87233 0.92543 0.97153 0.95787 1.21093 0.92213 1.49108 0.92659 0.93553 1.25661 0.96727 0.94383 1.01098 1.69987 1.03094 1.49010 1.33071 0.85492 0.78206 0.78004 0.79956 1.19683 1.20312 1.19994 0.89782 0.90781 0.89883 0.82838 0.86236 0.84650 0.91263 0.87567 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.03 71.24 0.71 -1.16 15 2 C -0.09 -2.46 5.88 -19.89 -0.12 -2.57 15 3 C -0.12 -3.64 9.67 22.16 0.21 -3.43 15 4 C -0.11 -4.32 9.97 22.47 0.22 -4.10 15 5 C -0.10 -4.40 5.16 -19.32 -0.10 -4.50 15 6 C -0.09 -4.06 6.48 22.56 0.15 -3.91 15 7 C -0.10 -3.54 9.73 22.36 0.22 -3.33 15 8 S -0.21 -9.21 23.05 -56.49 -1.30 -10.51 15 9 C -0.04 -2.04 6.62 72.37 0.48 -1.56 15 10 C 0.07 3.53 2.52 -11.84 -0.03 3.50 15 11 H 0.02 1.34 8.14 -2.39 -0.02 1.32 15 12 C -0.51 -28.46 8.51 25.60 0.22 -28.24 15 13 H 0.05 2.65 7.73 -2.91 -0.02 2.63 15 14 C 0.02 1.14 5.07 84.66 0.43 1.57 15 15 N -0.91 -50.92 11.55 21.45 0.25 -50.67 15 16 Si 0.96 43.47 29.54 68.60 2.03 45.50 15 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 20 H 0.08 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.07 1.24 8.09 -2.38 -0.02 1.23 15 22 H 0.08 1.26 8.09 -2.38 -0.02 1.24 15 23 H 0.15 3.45 8.06 -2.91 -0.02 3.43 15 24 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 25 H 0.14 4.02 8.06 -2.91 -0.02 4.00 15 26 H 0.07 3.20 8.14 -2.39 -0.02 3.18 15 27 H 0.11 5.74 6.10 -2.38 -0.01 5.73 15 28 H 0.27 14.09 8.31 -92.71 -0.77 13.32 15 Total: -1.00 -60.69 252.03 4.51 -56.18 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.15 Total: 7.23 kcal Atomic # 6 Polarization: -50.12 SS G_CDS: 2.40 Total: -47.73 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.25 Total: -50.67 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.30 Total: -10.51 kcal Total: -60.69 4.51 -56.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378224.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.287 kcal (2) G-P(sol) polarization free energy of solvation -60.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds