Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86798 * 120.00170 * 2 1 4 4 H 1.48503 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47185 * 299.99924 * 3 2 1 6 6 H 1.48497 * 109.47303 * 60.00217 * 3 2 1 7 7 C 1.38637 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99505 * 359.97438 * 7 2 1 10 10 C 1.35793 * 117.00034 * 185.05947 * 9 7 2 11 11 C 1.38913 * 120.08167 * 354.45178 * 10 9 7 12 12 C 1.37858 * 119.88952 * 180.10508 * 11 10 9 13 13 C 1.39199 * 120.31160 * 359.97438 * 12 11 10 14 14 C 1.38436 * 119.80484 * 359.85685 * 13 12 11 15 15 C 1.38423 * 119.89434 * 0.22524 * 14 13 12 16 16 C 1.50780 * 121.40540 * 180.29542 * 14 13 12 17 17 C 1.53061 * 109.70614 * 342.23512 * 16 14 13 18 18 C 1.53404 * 108.28746 * 48.20021 * 17 16 14 19 19 O 1.35917 * 118.42900 * 179.81736 * 13 12 11 20 20 H 0.96999 * 119.99447 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.05547 * 0.12213 * 11 10 9 22 22 H 1.07999 * 119.84518 * 179.97438 * 12 11 10 23 23 H 1.07998 * 119.86247 * 179.83012 * 15 14 13 24 24 H 1.09001 * 109.43367 * 102.26989 * 16 14 13 25 25 H 1.09006 * 109.43536 * 222.13994 * 16 14 13 26 26 H 1.09005 * 109.66691 * 288.52048 * 17 16 14 27 27 H 1.08998 * 109.72948 * 167.91550 * 17 16 14 28 28 H 1.09001 * 109.67886 * 175.55344 * 18 17 16 29 29 H 1.09005 * 109.68182 * 55.03349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5047 0.1056 11 6 3.4577 -3.4400 0.0920 12 6 4.2005 -4.5966 0.1978 13 6 3.5666 -5.8299 0.3190 14 6 2.1838 -5.8942 0.3361 15 6 1.4378 -4.7332 0.2281 16 6 1.4601 -7.2099 0.4724 17 6 2.4127 -8.3601 0.1374 18 6 3.7223 -8.1396 0.9051 19 8 4.3360 -6.9460 0.4170 20 1 -0.4849 0.8401 0.0004 21 1 3.9539 -2.4852 -0.0012 22 1 5.2792 -4.5455 0.1867 23 1 0.3591 -4.7842 0.2388 24 1 1.1021 -7.3226 1.4958 25 1 0.6120 -7.2299 -0.2121 26 1 2.6122 -8.3709 -0.9342 27 1 1.9656 -9.3076 0.4381 28 1 4.3889 -8.9871 0.7450 29 1 3.5109 -8.0348 1.9693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260393156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = -49.141065 kcal Electronic energy + Delta-G solvation = -14389.593388 eV Core-core repulsion = 11857.420517 eV Total energy + Delta-G solvation = -2532.172871 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02297 -38.20985 -35.53539 -33.83528 -32.19991 -29.90677 -28.72094 -25.32086 -25.13202 -22.81121 -21.81132 -19.71954 -17.93391 -17.15168 -16.43792 -15.77476 -15.05082 -14.36560 -14.07044 -14.01254 -13.55606 -13.43034 -12.85724 -12.61560 -12.48522 -11.99055 -11.65614 -11.39827 -11.11202 -10.81526 -10.69623 -10.39896 -10.21998 -9.95389 -9.28195 -8.70948 -8.10594 -6.87198 -6.40954 -3.99187 2.05121 2.35323 3.14289 3.16093 3.21570 3.83474 4.00037 4.48257 4.85661 4.94155 5.01761 5.12077 5.32469 5.43887 5.54609 5.69489 5.76243 5.79569 5.96699 6.13387 6.17571 6.21686 6.53312 6.78201 6.88535 7.12569 7.25707 7.35444 7.57426 8.02831 8.12395 9.04875 9.75665 10.77474 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.063621 B = 0.006610 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.000557 B = 4235.071912 C = 4630.829767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.181 6.181 10 C 0.132 3.868 11 C -0.201 4.201 12 C -0.097 4.097 13 C 0.033 3.967 14 C -0.113 4.113 15 C -0.164 4.164 16 C -0.075 4.075 17 C -0.157 4.157 18 C 0.064 3.936 19 O -0.325 6.325 20 H 0.268 0.732 21 H 0.134 0.866 22 H 0.117 0.883 23 H 0.120 0.880 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -11.554 1.268 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.085 6.085 10 C 0.080 3.920 11 C -0.221 4.221 12 C -0.116 4.116 13 C -0.011 4.011 14 C -0.114 4.114 15 C -0.183 4.183 16 C -0.112 4.112 17 C -0.195 4.195 18 C -0.011 4.011 19 O -0.240 6.240 20 H 0.078 0.922 21 H 0.152 0.848 22 H 0.135 0.865 23 H 0.138 0.862 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.791 -11.354 1.198 12.381 hybrid contribution 0.243 0.773 0.066 0.814 sum 5.034 -10.580 1.264 11.785 Atomic orbital electron populations 1.70057 1.05913 1.27413 1.46688 1.25263 0.95840 0.98751 0.96729 0.85658 0.79142 0.80489 0.78195 1.19118 1.20209 1.20202 1.21339 0.91756 0.80903 1.52705 0.89136 1.83988 1.33977 1.11214 1.79365 1.19231 0.90184 0.88211 0.94409 1.21030 0.93729 0.98275 1.09038 1.20222 0.99125 0.89477 1.02784 1.18250 0.88855 0.85909 1.08052 1.19305 0.92081 0.94765 1.05206 1.19909 0.99313 0.89408 1.09690 1.20409 0.97661 0.91042 1.02043 1.22201 0.96719 0.98878 1.01654 1.22749 0.94661 0.86477 0.97255 1.85909 1.38388 1.17329 1.82420 0.92175 0.84809 0.86540 0.86235 0.90950 0.90417 0.90738 0.90546 0.88598 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.57 13.67 55.48 0.76 -24.82 15 2 C 0.04 1.05 5.49 -17.51 -0.10 0.95 15 3 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 15 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.39 -11.02 9.49 30.88 0.29 -10.72 15 8 H 0.09 2.36 5.21 -52.49 -0.27 2.09 15 9 O -0.18 -5.22 9.76 -0.04 0.00 -5.22 15 10 C 0.13 3.26 6.64 -39.16 -0.26 3.00 15 11 C -0.20 -4.50 9.16 -39.47 -0.36 -4.86 15 12 C -0.10 -1.94 9.93 -39.36 -0.39 -2.33 15 13 C 0.03 0.64 6.48 -39.15 -0.25 0.38 15 14 C -0.11 -2.13 5.75 -104.44 -0.60 -2.73 15 15 C -0.16 -3.55 9.61 -39.34 -0.38 -3.93 15 16 C -0.07 -1.07 5.85 -27.81 -0.16 -1.23 15 17 C -0.16 -1.87 6.19 -26.49 -0.16 -2.04 15 18 C 0.06 0.81 7.02 37.37 0.26 1.08 15 19 O -0.32 -5.57 10.27 -19.48 -0.20 -5.77 15 20 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.13 2.94 5.64 -52.48 -0.30 2.64 15 22 H 0.12 2.04 8.06 -52.49 -0.42 1.62 15 23 H 0.12 2.48 8.06 -52.49 -0.42 2.06 15 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 LS Contribution 250.32 15.07 3.77 3.77 Total: -1.00 -31.24 250.32 -5.89 -37.14 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.09 Total: 1.65 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -2.11 Total: -22.43 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.76 Total: -24.82 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.20 Total: -10.99 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.24 -5.89 -37.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.005 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds