Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86798 * 120.00170 * 2 1 4 4 H 1.48503 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47185 * 299.99924 * 3 2 1 6 6 H 1.48497 * 109.47303 * 60.00217 * 3 2 1 7 7 C 1.38637 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99505 * 359.97438 * 7 2 1 10 10 C 1.35793 * 117.00034 * 185.05947 * 9 7 2 11 11 C 1.38913 * 120.08167 * 354.45178 * 10 9 7 12 12 C 1.37858 * 119.88952 * 180.10508 * 11 10 9 13 13 C 1.39199 * 120.31160 * 359.97438 * 12 11 10 14 14 C 1.38436 * 119.80484 * 359.85685 * 13 12 11 15 15 C 1.38423 * 119.89434 * 0.22524 * 14 13 12 16 16 C 1.50780 * 121.40540 * 180.29542 * 14 13 12 17 17 C 1.53061 * 109.70614 * 342.23512 * 16 14 13 18 18 C 1.53404 * 108.28746 * 48.20021 * 17 16 14 19 19 O 1.35917 * 118.42900 * 179.81736 * 13 12 11 20 20 H 0.96999 * 119.99447 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.05547 * 0.12213 * 11 10 9 22 22 H 1.07999 * 119.84518 * 179.97438 * 12 11 10 23 23 H 1.07998 * 119.86247 * 179.83012 * 15 14 13 24 24 H 1.09001 * 109.43367 * 102.26989 * 16 14 13 25 25 H 1.09006 * 109.43536 * 222.13994 * 16 14 13 26 26 H 1.09005 * 109.66691 * 288.52048 * 17 16 14 27 27 H 1.08998 * 109.72948 * 167.91550 * 17 16 14 28 28 H 1.09001 * 109.67886 * 175.55344 * 18 17 16 29 29 H 1.09005 * 109.68182 * 55.03349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5047 0.1056 11 6 3.4577 -3.4400 0.0920 12 6 4.2005 -4.5966 0.1978 13 6 3.5666 -5.8299 0.3190 14 6 2.1838 -5.8942 0.3361 15 6 1.4378 -4.7332 0.2281 16 6 1.4601 -7.2099 0.4724 17 6 2.4127 -8.3601 0.1374 18 6 3.7223 -8.1396 0.9051 19 8 4.3360 -6.9460 0.4170 20 1 -0.4849 0.8401 0.0004 21 1 3.9539 -2.4852 -0.0012 22 1 5.2792 -4.5455 0.1867 23 1 0.3591 -4.7842 0.2388 24 1 1.1021 -7.3226 1.4958 25 1 0.6120 -7.2299 -0.2121 26 1 2.6122 -8.3709 -0.9342 27 1 1.9656 -9.3076 0.4381 28 1 4.3889 -8.9871 0.7450 29 1 3.5109 -8.0348 1.9693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393156.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = -69.276197 kcal Electronic energy + Delta-G solvation = -14390.466513 eV Core-core repulsion = 11857.420517 eV Total energy + Delta-G solvation = -2533.045996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50933 -39.94833 -37.19884 -35.09062 -34.22544 -31.36946 -30.34545 -27.31369 -26.41661 -24.22084 -23.44524 -21.22676 -19.62187 -18.82850 -18.13700 -17.22458 -16.43709 -16.06438 -15.67915 -15.45725 -15.25503 -14.90628 -14.45303 -13.98993 -13.87714 -13.55712 -13.47554 -12.99610 -12.80606 -12.13814 -12.02036 -11.92440 -11.55318 -11.50380 -11.05717 -10.65876 -9.72152 -8.59412 -8.45146 -6.12296 0.39960 0.66923 1.36311 1.44143 1.54597 2.18687 2.52957 2.78005 3.11850 3.43804 3.81401 3.92464 3.95542 4.05534 4.32274 4.37690 4.51470 4.61046 4.69735 4.79064 4.94935 5.01225 5.14328 5.15367 5.24325 5.36037 5.53353 5.63796 5.88340 6.02783 6.67612 6.99491 7.80149 8.78277 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.063621 B = 0.006610 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.000557 B = 4235.071912 C = 4630.829767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.232 6.232 10 C 0.091 3.909 11 C -0.207 4.207 12 C -0.103 4.103 13 C 0.049 3.951 14 C -0.111 4.111 15 C -0.172 4.172 16 C -0.079 4.079 17 C -0.150 4.150 18 C 0.051 3.949 19 O -0.332 6.332 20 H 0.272 0.728 21 H 0.130 0.870 22 H 0.143 0.857 23 H 0.119 0.881 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 -13.755 1.643 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.041 3.959 11 C -0.226 4.226 12 C -0.122 4.122 13 C 0.005 3.995 14 C -0.112 4.112 15 C -0.191 4.191 16 C -0.116 4.116 17 C -0.187 4.187 18 C -0.023 4.023 19 O -0.248 6.248 20 H 0.081 0.919 21 H 0.148 0.852 22 H 0.161 0.839 23 H 0.137 0.863 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.530 -13.624 1.578 15.190 hybrid contribution -0.193 1.062 -0.014 1.080 sum 6.337 -12.562 1.564 14.156 Atomic orbital electron populations 1.70199 1.07986 1.28646 1.49226 1.26570 0.96870 1.02664 0.95980 0.84524 0.78254 0.74868 0.78528 1.17470 1.19370 1.19364 1.21852 0.92522 0.81499 1.53041 0.88135 1.83949 1.35548 1.12327 1.82126 1.19755 0.91428 0.88157 0.96554 1.21070 0.93019 0.99249 1.09310 1.20492 1.00396 0.89113 1.02166 1.18427 0.89165 0.86752 1.05192 1.19794 0.92308 0.95941 1.03161 1.20169 0.99741 0.89579 1.09619 1.20586 0.98200 0.89343 1.03434 1.22215 0.95737 0.99436 1.01330 1.23236 0.95910 0.85365 0.97815 1.85915 1.38757 1.17835 1.82295 0.91900 0.85233 0.83918 0.86273 0.89261 0.89504 0.91193 0.86555 0.84954 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.11 13.67 21.61 0.30 -56.81 15 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 15 3 Si 1.02 43.34 29.55 68.60 2.03 45.37 15 4 H -0.25 -9.88 7.11 99.48 0.71 -9.17 15 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.41 -24.40 9.49 67.92 0.64 -23.75 15 8 H 0.10 5.45 5.21 -2.91 -0.02 5.44 15 9 O -0.23 -14.22 9.76 -23.05 -0.22 -14.44 15 10 C 0.09 4.66 6.64 22.55 0.15 4.81 15 11 C -0.21 -9.46 9.16 22.34 0.20 -9.25 15 12 C -0.10 -4.00 9.93 22.41 0.22 -3.78 15 13 C 0.05 1.79 6.48 22.55 0.15 1.93 15 14 C -0.11 -4.03 5.75 -19.75 -0.11 -4.14 15 15 C -0.17 -7.59 9.61 22.43 0.22 -7.38 15 16 C -0.08 -2.00 5.85 29.89 0.17 -1.83 15 17 C -0.15 -2.86 6.19 30.75 0.19 -2.67 15 18 C 0.05 1.05 7.02 72.12 0.51 1.55 15 19 O -0.33 -10.18 10.27 -92.62 -0.95 -11.13 15 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 21 H 0.13 5.88 5.64 -2.91 -0.02 5.86 15 22 H 0.14 4.69 8.06 -2.91 -0.02 4.67 15 23 H 0.12 5.13 8.06 -2.91 -0.02 5.10 15 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.09 2.09 8.14 -2.38 -0.02 2.07 15 26 H 0.07 1.44 8.14 -2.38 -0.02 1.42 15 27 H 0.12 1.39 8.14 -2.39 -0.02 1.37 15 28 H 0.13 1.82 8.14 -2.39 -0.02 1.80 15 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 15 Total: -1.00 -71.63 250.32 5.11 -66.52 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.16 Total: 15.89 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 2.81 Total: -45.40 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.30 Total: -56.81 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.18 Total: -25.57 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.63 5.11 -66.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393156.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.755 kcal (2) G-P(sol) polarization free energy of solvation -71.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds