Wall clock time and date at job start Mon Mar 30 2020 02:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37736 * 119.47525 * 2 1 4 4 C 1.38274 * 120.54649 * 180.02562 * 3 2 1 5 5 C 1.38076 * 119.29204 * 359.80229 * 4 3 2 6 6 C 1.38780 * 120.15381 * 0.51253 * 5 4 3 7 7 C 1.38925 * 121.15413 * 359.31169 * 6 5 4 8 8 C 1.50865 * 115.37698 * 180.63289 * 7 6 5 9 9 C 1.54134 * 110.54325 * 339.70751 * 8 7 6 10 10 H 1.08994 * 111.12768 * 146.14283 * 9 8 7 11 11 C 1.50701 * 111.09485 * 270.21551 * 9 8 7 12 12 H 1.07998 * 120.00416 * 356.99365 * 11 9 8 13 13 C 1.37882 * 119.99394 * 176.99329 * 11 9 8 14 14 N 1.31508 * 120.00314 * 8.71832 * 13 11 9 15 15 Si 1.86800 * 119.99544 * 188.71787 * 13 11 9 16 16 H 1.48500 * 109.47102 * 94.97850 * 15 13 11 17 17 H 1.48504 * 109.46966 * 214.98159 * 15 13 11 18 18 H 1.48500 * 109.47190 * 334.97674 * 15 13 11 19 19 S 1.77436 * 130.57439 * 179.61229 * 6 5 4 20 20 H 1.09008 * 109.47254 * 270.02658 * 1 2 3 21 21 H 1.09000 * 109.46970 * 30.02670 * 1 2 3 22 22 H 1.09002 * 109.47256 * 150.02496 * 1 2 3 23 23 H 1.08008 * 119.72726 * 359.97438 * 3 2 1 24 24 H 1.08006 * 120.35905 * 180.09714 * 4 3 2 25 25 H 1.08003 * 119.92355 * 180.30320 * 5 4 3 26 26 H 1.08999 * 109.26746 * 219.41799 * 8 7 6 27 27 H 1.09000 * 109.20414 * 99.96371 * 8 7 6 28 28 H 0.96995 * 120.00273 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1847 1.1991 0.0000 4 6 3.5672 1.2249 -0.0005 5 6 4.2651 0.0336 0.0031 6 6 3.5822 -1.1745 -0.0035 7 6 2.1935 -1.2151 0.0004 8 6 1.5871 -2.5965 0.0074 9 6 2.6078 -3.6378 -0.4920 10 1 2.4773 -4.5920 0.0185 11 6 2.5205 -3.8095 -1.9866 12 1 1.7721 -3.2712 -2.5492 13 6 3.3962 -4.6538 -2.6358 14 7 4.1914 -5.4373 -1.9407 15 14 3.4528 -4.6847 -4.5027 16 1 4.5279 -3.7784 -4.9803 17 1 3.7290 -6.0681 -4.9667 18 1 2.1466 -4.2323 -5.0451 19 16 4.1874 -2.8424 -0.0103 20 1 -0.3634 0.0005 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3634 -0.8902 -0.5134 23 1 1.6317 2.1269 -0.0004 24 1 4.0956 2.1669 0.0010 25 1 5.3451 0.0419 0.0077 26 1 0.7128 -2.6088 -0.6435 27 1 1.2826 -2.8493 1.0230 28 1 4.8072 -6.0315 -2.3974 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412058.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:04 Heat of formation + Delta-G solvation = -7.605041 kcal Electronic energy + Delta-G solvation = -12479.089655 eV Core-core repulsion = 10391.470792 eV Total energy + Delta-G solvation = -2087.618863 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.28982 -36.18022 -34.24603 -33.44367 -30.56123 -27.84146 -26.89689 -24.20289 -22.46569 -21.54666 -18.90190 -17.90154 -16.75219 -16.34999 -15.98427 -15.55499 -15.24345 -14.48251 -14.12136 -13.98831 -13.34002 -13.24505 -13.00869 -12.94825 -12.75260 -12.53601 -12.45990 -11.79644 -11.71466 -11.65170 -10.75749 -10.55608 -10.19098 -9.38600 -8.44443 -7.93848 -6.40264 0.44580 0.49108 1.20560 1.38082 1.44138 1.49943 2.05625 2.33049 2.84018 3.19275 3.82911 4.06863 4.13822 4.23683 4.49651 4.52904 4.68539 4.71160 4.85478 4.94059 5.00390 5.08866 5.20021 5.38549 5.53622 5.57369 5.60234 5.74218 5.91777 6.17317 6.57650 7.21825 8.73883 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.033279 B = 0.010049 C = 0.009525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.166928 B = 2785.764538 C = 2939.052040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.099 4.099 5 C -0.130 4.130 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.070 4.070 9 C 0.109 3.891 10 H 0.054 0.946 11 C -0.515 4.515 12 H 0.068 0.932 13 C 0.030 3.970 14 N -0.887 5.887 15 Si 0.962 3.038 16 H -0.280 1.280 17 H -0.275 1.275 18 H -0.259 1.259 19 S -0.292 6.292 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.158 0.842 24 H 0.160 0.840 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 11.541 2.405 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.076 4.076 3 C -0.156 4.156 4 C -0.118 4.118 5 C -0.154 4.154 6 C -0.189 4.189 7 C -0.125 4.125 8 C -0.108 4.108 9 C -0.015 4.015 10 H 0.072 0.928 11 C -0.557 4.557 12 H 0.086 0.914 13 C -0.176 4.176 14 N -0.522 5.522 15 Si 0.786 3.214 16 H -0.206 1.206 17 H -0.200 1.200 18 H -0.183 1.183 19 S -0.045 6.045 20 H 0.101 0.899 21 H 0.106 0.894 22 H 0.078 0.922 23 H 0.175 0.825 24 H 0.178 0.822 25 H 0.137 0.863 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.477 10.722 2.713 11.931 hybrid contribution -0.397 -0.194 -1.015 1.107 sum -4.874 10.527 1.698 11.724 Atomic orbital electron populations 1.20852 0.89321 1.03432 1.03125 1.20038 0.97501 0.91141 0.98940 1.21131 0.94403 0.97589 1.02472 1.21348 0.94618 0.97259 0.98615 1.20629 0.99799 0.90714 1.04305 1.22448 0.96688 0.96585 1.03178 1.20971 0.92727 0.95630 1.03170 1.20930 0.98895 0.89806 1.01174 1.21521 0.86716 0.94819 0.98396 0.92841 1.21387 1.17328 1.25453 0.91510 0.91430 1.25837 0.94507 0.93683 1.03601 1.70036 1.22219 1.21984 1.38004 0.85477 0.79011 0.77698 0.79193 1.20606 1.20036 1.18257 1.86381 1.32540 1.00488 1.85062 0.89943 0.89438 0.92176 0.82487 0.82247 0.86280 0.89522 0.90309 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.76 71.23 0.70 -1.97 15 2 C -0.07 -2.38 5.90 -19.66 -0.12 -2.50 15 3 C -0.14 -3.69 9.61 22.16 0.21 -3.48 15 4 C -0.10 -2.84 10.08 22.24 0.22 -2.61 15 5 C -0.13 -4.85 10.05 22.36 0.22 -4.63 15 6 C -0.08 -3.38 6.48 22.56 0.15 -3.24 15 7 C -0.12 -4.86 5.94 -19.33 -0.11 -4.98 15 8 C -0.07 -2.95 5.28 30.28 0.16 -2.79 15 9 C 0.11 5.66 3.20 30.23 0.10 5.75 15 10 H 0.05 2.97 8.14 -2.39 -0.02 2.95 15 11 C -0.51 -28.18 8.56 25.60 0.22 -27.96 15 12 H 0.07 3.60 7.67 -2.91 -0.02 3.58 15 13 C 0.03 1.65 5.28 84.66 0.45 2.10 15 14 N -0.89 -51.42 12.96 21.45 0.28 -51.15 15 15 Si 0.96 43.18 29.55 68.60 2.03 45.21 15 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 18 H -0.26 -11.01 7.11 99.48 0.71 -10.31 15 19 S -0.29 -15.32 22.03 -56.49 -1.24 -16.57 15 20 H 0.08 1.71 8.14 -2.38 -0.02 1.69 15 21 H 0.09 1.64 8.07 -2.39 -0.02 1.62 15 22 H 0.06 1.54 6.76 -2.39 -0.02 1.53 15 23 H 0.16 2.97 8.06 -2.91 -0.02 2.94 15 24 H 0.16 3.24 8.06 -2.91 -0.02 3.22 15 25 H 0.12 4.21 8.06 -2.91 -0.02 4.18 15 26 H 0.09 3.43 6.69 -2.39 -0.02 3.41 15 27 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 28 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 Total: -1.00 -64.53 252.10 4.40 -60.12 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.15 Total: 8.67 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 2.20 Total: -46.29 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.28 Total: -51.15 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -15.32 SS G_CDS: -1.24 Total: -16.57 kcal Total: -64.53 4.40 -60.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412058.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.519 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds