Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32166 * 120.66002 * 2 1 4 4 C 1.32734 * 121.16239 * 180.02562 * 3 2 1 5 5 N 1.38440 * 118.90312 * 179.97438 * 4 3 2 6 6 C 1.36955 * 120.00028 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99858 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99852 * 179.97438 * 6 5 4 9 9 N 1.31550 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99831 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47120 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46931 * 120.00274 * 10 8 6 13 13 H 1.48495 * 109.47197 * 240.00153 * 10 8 6 14 14 N 1.32476 * 122.20049 * 0.02562 * 4 3 2 15 15 C 1.32391 * 120.44230 * 359.97438 * 14 4 3 16 16 O 1.34670 * 134.88376 * 180.02562 * 15 14 4 17 17 C 1.34401 * 108.25382 * 179.97438 * 16 15 14 18 18 N 1.29944 * 110.32863 * 359.97438 * 17 16 15 19 19 C 1.35798 * 108.71550 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.46789 * 269.97685 * 1 2 3 21 21 H 1.09000 * 109.47376 * 29.97538 * 1 2 3 22 22 H 1.08999 * 109.46998 * 149.97911 * 1 2 3 23 23 H 0.96996 * 120.00024 * 0.02562 * 5 4 3 24 24 H 0.96998 * 120.00322 * 179.97438 * 9 8 6 25 25 H 1.08011 * 124.83420 * 180.27378 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1810 1.1369 0.0000 4 6 3.5082 1.1485 -0.0005 5 7 4.1667 2.3663 -0.0010 6 6 5.5357 2.4045 -0.0021 7 1 6.1016 1.4846 -0.0029 8 6 6.1959 3.6256 -0.0031 9 7 5.5067 4.7461 -0.0026 10 14 8.0633 3.6777 -0.0039 11 1 8.5971 2.2920 -0.0038 12 1 8.5380 4.3906 -1.2170 13 1 8.5390 4.3921 1.2080 14 7 4.2240 0.0338 -0.0015 15 6 3.6259 -1.1474 -0.0016 16 8 4.0479 -2.4262 -0.0020 17 6 2.9677 -3.2260 -0.0013 18 7 1.8799 -2.5153 0.0002 19 6 2.2185 -1.2002 -0.0001 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 3.6585 3.1925 -0.0006 24 1 5.9680 5.5993 -0.0030 25 1 2.9994 -4.3056 0.0028 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446948.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = 50.034416 kcal Electronic energy + Delta-G solvation = -14156.454764 eV Core-core repulsion = 11557.334872 eV Total energy + Delta-G solvation = -2599.119892 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.10671 -40.90854 -37.47566 -35.74378 -34.57791 -33.83333 -31.29080 -28.80766 -27.10839 -24.85895 -24.00393 -22.35451 -20.63435 -19.67114 -18.80767 -17.87761 -17.85957 -16.39510 -16.19979 -15.58448 -15.56279 -15.41398 -14.21045 -14.11688 -13.64568 -13.07162 -13.05946 -12.71519 -12.62245 -12.45897 -12.09730 -11.99115 -11.61409 -11.16202 -10.63450 -9.89934 -9.06922 -8.71636 -5.97806 -0.16841 0.29571 1.21584 1.40242 1.40289 1.55917 1.66867 2.14136 2.65855 2.66366 3.17837 3.24879 3.41627 3.55212 4.06251 4.35085 4.75625 4.78049 4.87232 4.98538 5.19806 5.29089 5.47628 5.69142 6.18473 6.47141 6.66548 6.89657 7.08746 7.70016 8.44736 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.041481 B = 0.008115 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.852575 B = 3449.713646 C = 4109.422830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.280 3.720 3 N -0.584 5.584 4 C 0.499 3.501 5 N -0.493 5.493 6 C -0.309 4.309 7 H 0.107 0.893 8 C -0.012 4.012 9 N -0.903 5.903 10 Si 1.011 2.989 11 H -0.264 1.264 12 H -0.268 1.268 13 H -0.267 1.267 14 N -0.603 5.603 15 C 0.292 3.708 16 O -0.230 6.230 17 C 0.196 3.804 18 N -0.456 5.456 19 C -0.211 4.211 20 H 0.101 0.899 21 H 0.089 0.911 22 H 0.096 0.904 23 H 0.413 0.587 24 H 0.287 0.713 25 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -9.835 0.047 10.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.120 3.880 3 N -0.309 5.309 4 C 0.145 3.855 5 N -0.103 5.103 6 C -0.440 4.440 7 H 0.125 0.875 8 C -0.215 4.215 9 N -0.539 5.539 10 Si 0.832 3.168 11 H -0.188 1.188 12 H -0.193 1.193 13 H -0.192 1.192 14 N -0.346 5.346 15 C 0.100 3.900 16 O -0.117 6.117 17 C -0.037 4.037 18 N -0.182 5.182 19 C -0.333 4.333 20 H 0.119 0.881 21 H 0.108 0.892 22 H 0.115 0.885 23 H 0.250 0.750 24 H 0.097 0.903 25 H 0.329 0.671 Dipole moment (debyes) X Y Z Total from point charges -4.491 -8.741 0.046 9.828 hybrid contribution 1.066 0.083 0.009 1.069 sum -3.425 -8.658 0.055 9.311 Atomic orbital electron populations 1.20784 0.84298 1.04735 1.04752 1.21352 0.98369 0.83523 0.84761 1.67781 1.07109 1.29912 1.26117 1.18742 0.84290 0.85666 0.96785 1.40592 1.06813 1.02547 1.60387 1.20219 0.80493 0.95454 1.47794 0.87523 1.26420 1.06372 0.93528 0.95221 1.69755 1.39194 0.98779 1.46143 0.84606 0.74570 0.79015 0.78605 1.18816 1.19253 1.19243 1.66273 1.40913 0.94535 1.32849 1.20221 0.90212 0.85409 0.94162 1.84353 1.38682 1.12836 1.75834 1.29376 0.75771 0.99610 0.98963 1.70111 1.30184 1.00417 1.17526 1.20591 0.93429 0.94248 1.24985 0.88094 0.89193 0.88523 0.74993 0.90270 0.67119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.43 10.23 71.24 0.73 -1.70 15 2 C 0.28 11.10 6.86 42.82 0.29 11.40 15 3 N -0.58 -26.93 10.37 -185.23 -1.92 -28.85 15 4 C 0.50 25.79 8.37 261.37 2.19 27.98 15 5 N -0.49 -26.35 5.43 -194.28 -1.05 -27.41 15 6 C -0.31 -16.78 9.68 84.03 0.81 -15.97 15 7 H 0.11 5.98 7.03 -2.91 -0.02 5.96 15 8 C -0.01 -0.62 5.50 84.87 0.47 -0.15 15 9 N -0.90 -47.19 13.05 21.65 0.28 -46.91 15 10 Si 1.01 40.31 29.55 68.60 2.03 42.34 15 11 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 12 H -0.27 -10.22 7.11 99.48 0.71 -9.52 15 13 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 14 N -0.60 -31.35 9.09 -311.00 -2.83 -34.17 15 15 C 0.29 13.28 8.66 85.25 0.74 14.02 15 16 O -0.23 -8.46 10.76 -7.05 -0.08 -8.54 15 17 C 0.20 5.16 13.13 130.52 1.71 6.87 15 18 N -0.46 -14.99 11.33 -307.96 -3.49 -18.48 15 19 C -0.21 -8.54 7.01 39.48 0.28 -8.26 15 20 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.10 2.35 8.10 -2.39 -0.02 2.33 15 23 H 0.41 21.96 8.00 -92.71 -0.74 21.22 15 24 H 0.29 13.83 8.31 -92.71 -0.77 13.06 15 25 H 0.31 3.27 8.06 -2.91 -0.02 3.25 15 Total: -1.00 -66.87 236.14 0.67 -66.21 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.51 Total: 21.63 kcal Atomic # 6 Polarization: 26.97 SS G_CDS: 7.22 Total: 34.19 kcal Atomic # 7 Polarization: -146.81 SS G_CDS: -9.01 Total: -155.82 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.08 Total: -8.54 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -66.87 0.67 -66.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446948.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.240 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds