Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47038 * 270.00267 * 3 2 1 5 5 H 1.48493 * 109.46792 * 29.99704 * 3 2 1 6 6 H 1.48499 * 109.47103 * 150.00009 * 3 2 1 7 7 C 1.37884 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99841 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.53011 * 109.47081 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.80895 * 303.13093 * 10 9 7 12 12 C 1.54710 * 110.75046 * 179.80810 * 10 9 7 13 13 C 1.51642 * 101.98293 * 266.70529 * 12 10 9 14 14 C 1.38827 * 107.06551 * 345.09939 * 13 12 10 15 15 C 1.39288 * 118.91257 * 178.85779 * 14 13 12 16 16 C 1.38003 * 120.35527 * 0.02601 * 15 14 13 17 17 C 1.38151 * 120.41485 * 0.07974 * 16 15 14 18 18 C 1.38180 * 132.17109 * 163.77013 * 13 12 10 19 19 O 1.35896 * 120.06665 * 1.62025 * 18 13 12 20 20 O 1.36148 * 111.21687 * 358.36603 * 14 13 12 21 21 H 0.97005 * 119.99968 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47694 * 60.00108 * 9 7 2 23 23 H 1.09000 * 109.47643 * 299.99330 * 9 7 2 24 24 H 1.08993 * 110.93804 * 25.07867 * 12 10 9 25 25 H 1.09002 * 110.93557 * 148.72940 * 12 10 9 26 26 H 1.08002 * 119.82429 * 180.02562 * 15 14 13 27 27 H 1.08006 * 119.79255 * 180.09505 * 16 15 14 28 28 H 1.07993 * 120.15026 * 179.81912 * 17 16 15 29 29 H 0.96700 * 114.00170 * 269.72390 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 1 3.6259 -3.1872 0.8525 12 6 5.5682 -2.6713 -0.0064 13 6 5.8758 -2.7655 -1.4883 14 6 4.6954 -3.1191 -2.1278 15 6 4.6940 -3.2510 -3.5144 16 6 5.8496 -3.0335 -4.2368 17 6 7.0212 -2.6840 -3.5935 18 6 7.0329 -2.5470 -2.2113 19 8 8.1814 -2.2043 -1.5708 20 8 3.6844 -3.2962 -1.2332 21 1 -0.4850 0.8401 -0.0004 22 1 3.8752 -0.6805 0.8888 23 1 3.8745 -0.6802 -0.8912 24 1 5.9797 -1.7576 0.4224 25 1 5.9400 -3.5492 0.5219 26 1 3.7838 -3.5251 -4.0270 27 1 5.8379 -3.1368 -5.3118 28 1 7.9237 -2.5176 -4.1627 29 1 8.3051 -1.2507 -1.4683 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465471.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -53.875654 kcal Electronic energy + Delta-G solvation = -14613.987048 eV Core-core repulsion = 12081.608870 eV Total energy + Delta-G solvation = -2532.378178 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82936 -38.23827 -35.96767 -33.23054 -32.01089 -30.36118 -29.06072 -27.24260 -23.29995 -22.26333 -21.38946 -20.56685 -18.20140 -16.83952 -16.36762 -16.00007 -15.59197 -15.20664 -14.46402 -13.97904 -13.53045 -13.06967 -12.73530 -12.46152 -12.12972 -12.04353 -11.64333 -11.41369 -10.91396 -10.85026 -10.58402 -10.45586 -9.93713 -9.70268 -9.28615 -8.59628 -8.44690 -7.75379 -6.07888 -4.06306 1.40728 1.57113 3.26066 3.33541 3.34297 3.68078 3.96648 4.31794 4.39873 4.81036 4.98788 5.22188 5.24685 5.44105 5.57573 5.60707 5.65888 5.97460 6.10103 6.20875 6.37245 6.48254 6.56173 6.61894 6.72937 6.95180 7.15720 7.56954 7.69671 7.80057 8.47563 8.98298 9.52697 11.05479 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.033791 B = 0.008616 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.429887 B = 3248.849184 C = 3377.164704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.077 0.923 9 C -0.029 4.029 10 C 0.096 3.904 11 H 0.111 0.889 12 C -0.104 4.104 13 C -0.204 4.204 14 C 0.146 3.854 15 C -0.156 4.156 16 C -0.072 4.072 17 C -0.189 4.189 18 C 0.148 3.852 19 O -0.500 6.500 20 O -0.284 6.284 21 H 0.264 0.736 22 H 0.034 0.966 23 H 0.018 0.982 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.895 -3.332 -4.752 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.066 4.066 10 C 0.041 3.959 11 H 0.129 0.871 12 C -0.141 4.141 13 C -0.206 4.206 14 C 0.098 3.902 15 C -0.175 4.175 16 C -0.090 4.090 17 C -0.208 4.208 18 C 0.103 3.897 19 O -0.310 6.310 20 O -0.196 6.196 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 13.593 -3.932 -4.713 14.915 hybrid contribution 0.397 1.580 0.040 1.630 sum 13.990 -2.352 -4.673 14.937 Atomic orbital electron populations 1.69903 1.06218 1.26879 1.50829 1.24990 0.94731 0.98952 0.94589 0.86835 0.80306 0.83935 0.78561 1.20273 1.21177 1.19146 1.20977 0.88659 0.94831 1.50886 0.90490 1.20059 0.98589 0.90578 0.97357 1.23588 0.91007 0.96608 0.84710 0.87137 1.21880 0.97126 1.03094 0.91959 1.21151 0.93627 1.09057 0.96722 1.19575 0.86808 0.92627 0.91156 1.20326 0.99722 1.07353 0.90081 1.20646 0.91338 0.97541 0.99521 1.21139 0.99011 1.07624 0.92997 1.17623 0.83800 0.98676 0.89577 1.84765 1.38423 1.28810 1.79015 1.86972 1.40441 1.68989 1.23233 0.92653 0.94806 0.96398 0.89493 0.89938 0.85247 0.85142 0.85483 0.75631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 15 7 C -0.52 -14.71 9.51 -34.44 -0.33 -15.04 15 8 H 0.08 2.39 7.99 -52.48 -0.42 1.97 15 9 C -0.03 -0.68 3.67 -27.88 -0.10 -0.78 15 10 C 0.10 1.95 3.61 -25.83 -0.09 1.86 15 11 H 0.11 2.11 8.14 -51.93 -0.42 1.69 15 12 C -0.10 -1.74 6.64 -26.52 -0.18 -1.92 15 13 C -0.20 -3.58 6.21 -103.96 -0.65 -4.23 15 14 C 0.15 2.79 6.90 -38.97 -0.27 2.52 15 15 C -0.16 -2.56 10.06 -39.28 -0.40 -2.95 15 16 C -0.07 -0.98 10.01 -39.70 -0.40 -1.38 15 17 C -0.19 -2.58 10.01 -39.37 -0.39 -2.98 15 18 C 0.15 2.27 6.69 -39.36 -0.26 2.01 15 19 O -0.50 -6.64 13.49 -19.41 -0.26 -6.91 15 20 O -0.28 -6.16 10.65 -20.21 -0.22 -6.38 15 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 22 H 0.03 0.77 7.20 -51.93 -0.37 0.40 15 23 H 0.02 0.43 7.50 -51.93 -0.39 0.04 15 24 H 0.09 1.35 7.92 -51.93 -0.41 0.94 15 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.13 1.95 8.06 -52.49 -0.42 1.53 15 27 H 0.13 1.33 8.06 -52.48 -0.42 0.90 15 28 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 29 H 0.39 3.40 9.06 45.56 0.41 3.82 15 LS Contribution 253.55 15.07 3.82 3.82 Total: -1.00 -32.76 253.55 -6.17 -38.94 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -2.46 Total: 1.61 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -3.16 Total: -20.98 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.48 Total: -13.28 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.76 -6.17 -38.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465471.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.939 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds