Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.61113 * 2 1 4 4 H 1.08005 * 119.99819 * 359.66159 * 3 2 1 5 5 C 1.37875 * 120.00046 * 179.65500 * 3 2 1 6 6 N 1.31511 * 120.00192 * 0.02562 * 5 3 2 7 7 Si 1.86798 * 119.99979 * 180.02562 * 5 3 2 8 8 H 1.48506 * 109.47297 * 180.02562 * 7 5 3 9 9 H 1.48503 * 109.47261 * 60.00310 * 7 5 3 10 10 H 1.48500 * 109.47454 * 300.00304 * 7 5 3 11 11 O 1.43257 * 109.75338 * 120.43806 * 2 1 3 12 12 C 1.43080 * 113.02067 * 54.38283 * 11 2 1 13 13 C 1.50779 * 109.29074 * 48.64038 * 12 11 2 14 14 C 1.38258 * 119.64857 * 163.99480 * 13 12 11 15 15 C 1.38214 * 120.10474 * 179.71596 * 14 13 12 16 16 C 1.38292 * 120.08197 * 359.97438 * 15 14 13 17 17 C 1.38089 * 120.03453 * 0.07369 * 16 15 14 18 18 C 1.38587 * 120.43012 * 343.83022 * 13 12 11 19 19 O 1.35972 * 120.54247 * 0.40431 * 18 13 12 20 20 H 1.09001 * 109.47289 * 59.99392 * 1 2 3 21 21 H 1.08996 * 109.47171 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47021 * 300.00040 * 1 2 3 23 23 H 0.97001 * 119.99934 * 359.97438 * 6 5 3 24 24 H 1.09002 * 109.50158 * 288.69314 * 12 11 2 25 25 H 1.09007 * 109.52936 * 168.60503 * 12 11 2 26 26 H 1.08003 * 119.95051 * 359.73678 * 14 13 12 27 27 H 1.07996 * 119.95944 * 179.97438 * 15 14 13 28 28 H 1.07998 * 119.97653 * 180.09345 * 16 15 14 29 29 H 1.07998 * 119.99902 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0359 1.4196 0.0000 4 1 1.3360 2.2422 -0.0055 5 6 3.3920 1.6682 0.0072 6 7 4.2442 0.6666 0.0135 7 14 4.0189 3.4278 0.0079 8 1 5.5039 3.4243 0.0156 9 1 3.5189 4.1310 1.2166 10 1 3.5324 4.1273 -1.2084 11 8 2.0142 -0.6830 1.1624 12 6 1.4816 -2.0041 1.2976 13 6 1.6193 -2.7334 -0.0148 14 6 1.4874 -4.1093 -0.0499 15 6 1.6061 -4.7868 -1.2487 16 6 1.8565 -4.0901 -2.4168 17 6 1.9901 -2.7160 -2.3869 18 6 1.8733 -2.0333 -1.1836 19 8 2.0101 -0.6807 -1.1630 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.9186 -0.2472 0.0135 24 1 0.4284 -1.9454 1.5726 25 1 2.0303 -2.5408 2.0716 26 1 1.2911 -4.6555 0.8609 27 1 1.5031 -5.8615 -1.2733 28 1 1.9474 -4.6211 -3.3528 29 1 2.1852 -2.1725 -3.2995 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -68.223230 kcal Electronic energy + Delta-G solvation = -15315.177453 eV Core-core repulsion = 12782.177118 eV Total energy + Delta-G solvation = -2533.000336 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.13716 -37.31339 -35.17002 -32.93912 -31.04201 -30.16210 -28.83898 -25.60182 -24.68150 -22.33726 -21.95822 -19.35249 -17.68554 -17.52650 -15.85663 -15.26404 -14.87001 -14.17880 -13.90227 -13.69760 -13.52573 -13.20199 -12.81146 -11.98156 -11.75390 -11.59802 -11.37015 -11.24036 -10.92007 -10.84383 -10.58697 -10.13308 -9.98771 -9.16863 -8.76717 -8.65722 -8.31453 -7.47353 -6.51968 -4.43787 1.73963 1.97912 3.38729 3.39908 3.59523 4.15364 4.34467 4.45614 4.80462 5.20351 5.25442 5.40366 5.51063 5.69805 5.77928 5.95118 5.98100 6.04017 6.09828 6.16307 6.40277 6.50260 6.67446 6.76940 6.90529 6.96752 7.31765 7.62304 8.04452 8.26586 8.63806 8.69388 9.48052 10.87237 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.044227 B = 0.009935 C = 0.009328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.947136 B = 2817.512193 C = 3001.092162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.360 3.640 3 C -0.588 4.588 4 H 0.075 0.925 5 C 0.042 3.958 6 N -0.856 5.856 7 Si 1.075 2.925 8 H -0.279 1.279 9 H -0.283 1.283 10 H -0.284 1.284 11 O -0.372 6.372 12 C 0.092 3.908 13 C -0.209 4.209 14 C -0.080 4.080 15 C -0.178 4.178 16 C -0.088 4.088 17 C -0.168 4.168 18 C 0.156 3.844 19 O -0.313 6.313 20 H 0.064 0.936 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.290 0.710 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -6.596 -1.074 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.289 3.711 3 C -0.623 4.623 4 H 0.093 0.907 5 C -0.172 4.172 6 N -0.488 5.488 7 Si 0.901 3.099 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.210 1.210 11 O -0.293 6.293 12 C 0.015 3.985 13 C -0.210 4.210 14 C -0.098 4.098 15 C -0.197 4.197 16 C -0.106 4.106 17 C -0.187 4.187 18 C 0.108 3.892 19 O -0.228 6.228 20 H 0.083 0.917 21 H 0.059 0.941 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.810 -5.469 -1.062 6.750 hybrid contribution -1.724 -1.388 -0.019 2.214 sum -5.534 -6.857 -1.081 8.878 Atomic orbital electron populations 1.22624 0.97856 1.00392 1.02689 1.21086 0.88034 0.88605 0.73334 1.21571 0.95144 0.86843 1.58780 0.90736 1.26083 0.93219 1.06330 0.91599 1.70559 1.38271 1.01964 1.38034 0.83488 0.76524 0.73049 0.76831 1.20394 1.20949 1.20983 1.88738 1.69897 1.23953 1.46665 1.21320 0.98338 0.85808 0.93068 1.20487 1.09002 0.95097 0.96427 1.20669 0.98555 0.92756 0.97795 1.20798 1.06823 0.99182 0.92848 1.20838 0.98540 0.93312 0.97935 1.20598 1.07395 0.94122 0.96553 1.19084 0.91665 0.85989 0.92431 1.86912 1.76524 1.13257 1.46121 0.91708 0.94061 0.91391 0.89743 0.92977 0.89343 0.86526 0.86699 0.86293 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.19 37.16 0.30 -3.62 15 2 C 0.36 9.46 0.86 -27.88 -0.02 9.43 15 3 C -0.59 -16.65 8.50 -34.44 -0.29 -16.94 15 4 H 0.07 2.01 7.75 -52.48 -0.41 1.61 15 5 C 0.04 1.19 5.34 -17.82 -0.10 1.10 15 6 N -0.86 -26.32 13.40 55.43 0.74 -25.57 15 7 Si 1.07 24.52 29.90 -169.99 -5.08 19.44 15 8 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 11 O -0.37 -9.77 9.10 -59.11 -0.54 -10.31 15 12 C 0.09 1.92 6.19 36.04 0.22 2.14 15 13 C -0.21 -4.35 5.25 -104.45 -0.55 -4.89 15 14 C -0.08 -1.36 9.72 -39.58 -0.38 -1.75 15 15 C -0.18 -2.80 10.04 -39.57 -0.40 -3.19 15 16 C -0.09 -1.44 10.04 -39.62 -0.40 -1.84 15 17 C -0.17 -3.32 9.97 -39.41 -0.39 -3.71 15 18 C 0.16 3.59 6.13 -39.23 -0.24 3.35 15 19 O -0.31 -8.35 8.54 -43.53 -0.37 -8.72 15 20 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.04 0.84 6.02 -51.93 -0.31 0.52 15 22 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 23 H 0.29 9.15 5.68 -40.82 -0.23 8.92 15 24 H 0.05 0.99 6.97 -51.93 -0.36 0.62 15 25 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 26 H 0.12 1.64 8.06 -52.48 -0.42 1.22 15 27 H 0.11 1.43 8.06 -52.49 -0.42 1.01 15 28 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 29 H 0.12 2.32 8.06 -52.49 -0.42 1.90 15 LS Contribution 245.57 15.07 3.70 3.70 Total: -1.00 -31.85 245.57 -6.86 -38.72 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.07 Total: 2.68 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.25 Total: -19.93 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.91 Total: -19.03 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.44 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.85 -6.86 -38.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.507 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds