Wall clock time and date at job start Mon Mar 30 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00261 * 2 1 4 4 H 1.48498 * 109.47189 * 269.99836 * 3 2 1 5 5 H 1.48502 * 109.47147 * 29.99612 * 3 2 1 6 6 H 1.48498 * 109.47211 * 149.99841 * 3 2 1 7 7 C 1.37874 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00198 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00291 * 179.97438 * 7 2 1 10 10 N 1.46492 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.38514 * 120.00439 * 180.02562 * 10 9 7 12 12 N 1.32709 * 118.89584 * 359.97438 * 11 10 9 13 13 C 1.32204 * 121.15266 * 179.97438 * 12 11 10 14 14 C 1.39474 * 118.68323 * 0.02562 * 13 12 11 15 15 N 1.35890 * 134.88725 * 180.32293 * 14 13 12 16 16 C 1.29900 * 108.70529 * 180.02562 * 15 14 13 17 17 O 1.34421 * 110.30379 * 359.62766 * 16 15 14 18 18 C 1.34652 * 108.27106 * 0.23189 * 17 16 15 19 19 N 1.32369 * 118.90749 * 180.02562 * 11 10 9 20 20 H 0.97002 * 119.99894 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46680 * 60.00028 * 9 7 2 22 22 H 1.08999 * 109.47136 * 299.99930 * 9 7 2 23 23 H 0.97001 * 119.99998 * 0.02562 * 10 9 7 24 24 H 1.07999 * 120.65982 * 179.97438 * 13 12 11 25 25 H 1.08002 * 124.85148 * 179.90208 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0013 11 6 5.3615 -2.8285 0.0016 12 7 6.2044 -1.8035 0.0001 13 6 7.5127 -1.9938 0.0008 14 6 7.9990 -3.3010 0.0026 15 7 9.2357 -3.8641 0.0092 16 6 9.1050 -5.1565 0.0070 17 8 7.8038 -5.4937 0.0072 18 6 7.0744 -4.3619 0.0045 19 7 5.7788 -4.0847 0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 3.8751 -0.6797 0.8895 22 1 3.8745 -0.6809 -0.8905 23 1 3.3694 -3.3125 0.0020 24 1 8.1914 -1.1537 -0.0008 25 1 9.9247 -5.8598 0.0095 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533262.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:34 Heat of formation + Delta-G solvation = 82.637629 kcal Electronic energy + Delta-G solvation = -13866.000192 eV Core-core repulsion = 11268.294082 eV Total energy + Delta-G solvation = -2597.706111 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.34485 -39.95619 -35.66583 -34.70180 -33.28232 -32.59789 -29.78431 -27.46457 -25.14176 -23.47856 -22.31351 -21.66101 -18.87567 -18.62635 -17.50416 -17.00645 -16.30140 -15.26583 -14.86027 -14.61116 -14.56839 -13.53721 -13.45505 -12.78063 -12.48496 -12.06076 -11.74739 -11.04921 -10.91530 -10.70831 -10.29008 -10.05260 -9.65797 -9.59776 -8.99311 -8.77910 -7.52551 -6.28192 -4.32256 0.72015 1.22626 1.97616 2.45290 3.21172 3.28003 3.33897 3.49321 3.93713 3.94423 4.23442 4.25928 4.35822 4.87980 5.06368 5.24249 5.78999 5.85516 6.11281 6.58840 6.90562 6.91939 7.20641 7.28742 7.51013 7.83516 8.30310 8.50799 8.72860 9.29047 10.83613 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.068718 B = 0.006306 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.366330 B = 4439.448967 C = 4831.669858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.232 3.768 10 N -0.649 5.649 11 C 0.597 3.403 12 N -0.547 5.547 13 C 0.277 3.723 14 C -0.170 4.170 15 N -0.445 5.445 16 C 0.200 3.800 17 O -0.212 6.212 18 C 0.315 3.685 19 N -0.569 5.569 20 H 0.269 0.731 21 H 0.032 0.968 22 H 0.028 0.972 23 H 0.416 0.584 24 H 0.180 0.820 25 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.335 -6.187 0.034 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.588 4.588 8 H 0.100 0.900 9 C 0.110 3.890 10 N -0.279 5.279 11 C 0.240 3.760 12 N -0.270 5.270 13 C 0.099 3.901 14 C -0.290 4.290 15 N -0.173 5.173 16 C -0.034 4.034 17 O -0.099 6.099 18 C 0.124 3.876 19 N -0.306 5.306 20 H 0.079 0.921 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.254 0.746 24 H 0.197 0.803 25 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 15.521 -5.368 0.041 16.423 hybrid contribution 0.420 -0.187 -0.023 0.461 sum 15.941 -5.555 0.018 16.881 Atomic orbital electron populations 1.69872 1.06258 1.27590 1.48811 1.24762 0.94808 0.99151 0.93730 0.86805 0.80610 0.83101 0.79109 1.19754 1.20839 1.18258 1.21043 0.88207 0.95513 1.54031 0.90042 1.19684 0.95333 0.76557 0.97407 1.45034 0.99153 1.11896 1.71811 1.19229 0.88341 0.81747 0.86670 1.68259 1.02725 1.33660 1.22319 1.22418 0.90219 0.93225 0.84263 1.20964 0.90315 0.97845 1.19853 1.70318 1.23977 1.06602 1.16406 1.28182 0.82456 0.93013 0.99782 1.84408 1.19195 1.31450 1.74822 1.19809 0.90014 0.84067 0.93706 1.66419 1.12869 1.21995 1.29363 0.92090 0.94979 0.95432 0.74587 0.80289 0.72546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.96 55.43 0.77 -25.15 15 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 15 3 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.26 -5.81 6.54 56.52 0.37 -5.44 15 7 C -0.55 -14.73 9.83 -34.44 -0.34 -15.07 15 8 H 0.08 2.31 7.84 -52.48 -0.41 1.90 15 9 C 0.23 5.40 4.45 -5.20 -0.02 5.37 15 10 N -0.65 -13.50 5.70 -63.44 -0.36 -13.87 15 11 C 0.60 11.78 8.41 -322.53 -2.71 9.06 15 12 N -0.55 -10.13 9.54 -13.68 -0.13 -10.26 15 13 C 0.28 4.19 11.37 -16.93 -0.19 4.00 15 14 C -0.17 -2.64 7.30 -84.67 -0.62 -3.26 15 15 N -0.45 -5.91 11.34 -12.46 -0.14 -6.06 15 16 C 0.20 2.03 13.13 51.95 0.68 2.72 15 17 O -0.21 -2.96 10.75 4.43 0.05 -2.91 15 18 C 0.31 5.35 8.66 -16.33 -0.14 5.21 15 19 N -0.57 -10.85 10.48 -13.85 -0.15 -10.99 15 20 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.03 0.77 7.20 -51.93 -0.37 0.39 15 22 H 0.03 0.65 7.57 -51.93 -0.39 0.26 15 23 H 0.42 8.27 8.43 -40.82 -0.34 7.92 15 24 H 0.18 2.00 8.06 -52.49 -0.42 1.58 15 25 H 0.26 0.94 8.06 -52.49 -0.42 0.52 15 LS Contribution 234.08 15.07 3.53 3.53 Total: -1.00 -31.58 234.08 -6.08 -37.65 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -1.53 Total: 2.17 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -3.44 Total: 10.14 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: 0.00 Total: -66.33 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: 0.05 Total: -2.91 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.58 -6.08 -37.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533262.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.292 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds