Wall clock time and date at job start Mon Mar 30 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00261 * 2 1 4 4 H 1.48498 * 109.47189 * 269.99836 * 3 2 1 5 5 H 1.48502 * 109.47147 * 29.99612 * 3 2 1 6 6 H 1.48498 * 109.47211 * 149.99841 * 3 2 1 7 7 C 1.37874 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00198 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00291 * 179.97438 * 7 2 1 10 10 N 1.46492 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.38514 * 120.00439 * 180.02562 * 10 9 7 12 12 N 1.32709 * 118.89584 * 359.97438 * 11 10 9 13 13 C 1.32204 * 121.15266 * 179.97438 * 12 11 10 14 14 C 1.39474 * 118.68323 * 0.02562 * 13 12 11 15 15 N 1.35890 * 134.88725 * 180.32293 * 14 13 12 16 16 C 1.29900 * 108.70529 * 180.02562 * 15 14 13 17 17 O 1.34421 * 110.30379 * 359.62766 * 16 15 14 18 18 C 1.34652 * 108.27106 * 0.23189 * 17 16 15 19 19 N 1.32369 * 118.90749 * 180.02562 * 11 10 9 20 20 H 0.97002 * 119.99894 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46680 * 60.00028 * 9 7 2 22 22 H 1.08999 * 109.47136 * 299.99930 * 9 7 2 23 23 H 0.97001 * 119.99998 * 0.02562 * 10 9 7 24 24 H 1.07999 * 120.65982 * 179.97438 * 13 12 11 25 25 H 1.08002 * 124.85148 * 179.90208 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0013 11 6 5.3615 -2.8285 0.0016 12 7 6.2044 -1.8035 0.0001 13 6 7.5127 -1.9938 0.0008 14 6 7.9990 -3.3010 0.0026 15 7 9.2357 -3.8641 0.0092 16 6 9.1050 -5.1565 0.0070 17 8 7.8038 -5.4937 0.0072 18 6 7.0744 -4.3619 0.0045 19 7 5.7788 -4.0847 0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 3.8751 -0.6797 0.8895 22 1 3.8745 -0.6809 -0.8905 23 1 3.3694 -3.3125 0.0020 24 1 8.1914 -1.1537 -0.0008 25 1 9.9247 -5.8598 0.0095 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260533262.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:33 Heat of formation + Delta-G solvation = 56.428106 kcal Electronic energy + Delta-G solvation = -13867.136722 eV Core-core repulsion = 11268.294082 eV Total energy + Delta-G solvation = -2598.842641 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.47482 -41.26903 -37.17268 -35.95222 -34.61067 -34.53714 -31.24761 -29.13945 -26.34428 -24.98414 -23.65627 -23.11318 -20.23239 -19.95578 -19.06646 -18.16620 -17.89299 -16.69397 -16.31762 -16.01196 -15.87897 -15.22704 -14.69244 -14.47236 -14.37905 -13.27211 -13.06782 -12.86545 -12.69295 -11.90662 -11.85810 -11.65330 -11.57751 -11.10244 -10.78202 -10.32336 -8.94649 -8.38274 -6.47718 -0.43032 -0.07371 0.80622 1.39521 1.40818 1.41655 1.53886 2.13569 2.32050 2.62212 2.89179 2.97495 3.06754 3.22546 3.69283 4.14600 4.57974 4.67940 4.83100 5.05880 5.14934 5.24633 5.51401 5.84476 6.08699 6.38162 6.47055 6.58164 7.08001 7.22420 8.76930 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.068718 B = 0.006306 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.366330 B = 4439.448967 C = 4831.669858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.557 4.557 8 H 0.049 0.951 9 C 0.253 3.747 10 N -0.666 5.666 11 C 0.585 3.415 12 N -0.567 5.567 13 C 0.275 3.725 14 C -0.158 4.158 15 N -0.472 5.472 16 C 0.241 3.759 17 O -0.216 6.216 18 C 0.284 3.716 19 N -0.587 5.587 20 H 0.273 0.727 21 H 0.029 0.971 22 H 0.028 0.972 23 H 0.414 0.586 24 H 0.220 0.780 25 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.784 -6.180 0.027 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.167 1.167 7 C -0.595 4.595 8 H 0.067 0.933 9 C 0.130 3.870 10 N -0.298 5.298 11 C 0.228 3.772 12 N -0.290 5.290 13 C 0.099 3.901 14 C -0.276 4.276 15 N -0.199 5.199 16 C 0.008 3.992 17 O -0.103 6.103 18 C 0.095 3.905 19 N -0.324 5.324 20 H 0.082 0.918 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.252 0.748 24 H 0.236 0.764 25 H 0.337 0.663 Dipole moment (debyes) X Y Z Total from point charges 19.057 -5.394 0.034 19.805 hybrid contribution -0.426 -0.458 -0.022 0.625 sum 18.631 -5.852 0.011 19.528 Atomic orbital electron populations 1.70006 1.08136 1.28815 1.50454 1.25702 0.95608 1.03176 0.93211 0.85724 0.79670 0.78078 0.79663 1.18784 1.20367 1.16693 1.21295 0.90304 0.94469 1.53392 0.93306 1.19234 0.92660 0.78105 0.97024 1.44678 1.00054 1.10677 1.74430 1.19152 0.87894 0.82438 0.87720 1.68270 1.04041 1.33436 1.23243 1.23040 0.89509 0.94526 0.83017 1.21192 0.90980 0.97678 1.17791 1.70408 1.22443 1.07896 1.19125 1.29807 0.82020 0.93179 0.94165 1.84463 1.20481 1.30801 1.74596 1.20047 0.89862 0.85605 0.95022 1.66264 1.14579 1.22005 1.29564 0.91807 0.95293 0.95454 0.74803 0.76408 0.66263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.09 13.96 21.45 0.30 -55.79 15 2 C 0.02 1.29 5.47 84.65 0.46 1.75 15 3 Si 0.95 42.06 27.47 68.60 1.88 43.95 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.24 -10.17 6.54 99.48 0.65 -9.52 15 7 C -0.56 -30.79 9.83 25.60 0.25 -30.54 15 8 H 0.05 2.93 7.84 -2.91 -0.02 2.91 15 9 C 0.25 11.89 4.45 85.63 0.38 12.27 15 10 N -0.67 -28.50 5.70 -354.63 -2.02 -30.52 15 11 C 0.58 23.18 8.41 261.39 2.20 25.38 15 12 N -0.57 -20.45 9.54 -197.19 -1.88 -22.33 15 13 C 0.27 7.74 11.37 84.93 0.97 8.70 15 14 C -0.16 -4.53 7.30 39.42 0.29 -4.24 15 15 N -0.47 -10.71 11.34 -308.06 -3.49 -14.21 15 16 C 0.24 3.76 13.13 130.53 1.71 5.47 15 17 O -0.22 -5.39 10.75 -7.07 -0.08 -5.46 15 18 C 0.28 9.24 8.66 85.20 0.74 9.98 15 19 N -0.59 -22.38 10.48 -311.03 -3.26 -25.64 15 20 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 21 H 0.03 1.38 7.20 -2.39 -0.02 1.36 15 22 H 0.03 1.29 7.57 -2.39 -0.02 1.27 15 23 H 0.41 17.39 8.43 -92.71 -0.78 16.61 15 24 H 0.22 4.15 8.06 -2.91 -0.02 4.13 15 25 H 0.32 0.11 8.06 -2.91 -0.02 0.09 15 Total: -1.00 -70.75 234.08 -1.14 -71.89 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.41 Total: 9.33 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 7.00 Total: 28.77 kcal Atomic # 7 Polarization: -138.13 SS G_CDS: -10.35 Total: -148.48 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.08 Total: -5.46 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.95 kcal Total: -70.75 -1.14 -71.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533262.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.321 kcal (2) G-P(sol) polarization free energy of solvation -70.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds