Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38250 * 119.92638 * 2 1 4 4 C 1.38232 * 120.14014 * 180.02562 * 3 2 1 5 5 C 1.38550 * 120.03256 * 359.97438 * 4 3 2 6 6 C 1.39265 * 119.82402 * 0.02562 * 5 4 3 7 7 C 1.38231 * 119.92433 * 180.25019 * 2 1 3 8 8 O 1.36505 * 108.63886 * 179.97438 * 6 5 4 9 9 C 1.43986 * 105.48229 * 17.26940 * 8 6 5 10 10 H 1.09007 * 110.57075 * 91.45379 * 9 8 6 11 11 C 1.53001 * 110.56910 * 214.17524 * 9 8 6 12 12 C 1.50699 * 109.46993 * 185.00489 * 11 9 8 13 13 H 1.07997 * 120.00407 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99795 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99926 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47188 * 60.00055 * 16 14 12 18 18 H 1.48498 * 109.46998 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46945 * 299.99982 * 16 14 12 20 20 O 1.36496 * 131.53367 * 179.97438 * 5 4 3 21 21 H 1.08999 * 109.47260 * 89.99647 * 1 2 3 22 22 H 1.08999 * 109.47150 * 209.99543 * 1 2 3 23 23 H 1.09000 * 109.46651 * 330.00076 * 1 2 3 24 24 H 1.08002 * 119.92912 * 0.02562 * 3 2 1 25 25 H 1.08003 * 119.98952 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.99380 * 0.08296 * 7 2 1 27 27 H 1.09003 * 109.47210 * 304.99912 * 11 9 8 28 28 H 1.08990 * 109.47390 * 65.00354 * 11 9 8 29 29 H 0.97002 * 120.00511 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1968 1.1982 0.0000 4 6 3.5791 1.2033 -0.0005 5 6 4.2770 0.0064 -0.0005 6 6 3.5822 -1.2005 -0.0005 7 6 2.1967 -1.1980 -0.0052 8 8 4.4855 -2.2239 -0.0011 9 6 5.7334 -1.6354 0.4105 10 1 5.8502 -1.7025 1.4922 11 6 6.9073 -2.3136 -0.2987 12 6 8.2038 -1.7651 0.2392 13 1 8.1917 -1.0081 1.0095 14 6 9.4054 -2.2288 -0.2527 15 7 9.4202 -3.1502 -1.1910 16 14 11.0125 -1.5484 0.4135 17 1 11.0957 -1.8139 1.8722 18 1 12.1519 -2.2058 -0.2756 19 1 11.0676 -0.0840 0.1730 20 8 5.6156 -0.2607 -0.0014 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6544 2.1321 0.0004 25 1 4.1155 2.1408 -0.0001 26 1 1.6553 -2.1325 -0.0107 27 1 6.8666 -3.3884 -0.1221 28 1 6.8468 -2.1187 -1.3693 29 1 10.2656 -3.4767 -1.5369 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260546603.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = -52.084615 kcal Electronic energy + Delta-G solvation = -14282.878988 eV Core-core repulsion = 11750.578475 eV Total energy + Delta-G solvation = -2532.300513 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.56230 -37.90582 -35.56522 -33.41983 -31.86946 -30.45645 -29.22379 -26.14870 -24.51193 -22.61238 -21.59530 -21.18413 -17.52167 -17.22613 -16.83596 -15.96352 -15.13825 -14.49015 -14.06558 -14.02283 -13.41139 -13.39031 -13.26282 -12.42131 -12.27076 -12.15203 -11.92798 -11.69274 -11.35199 -10.90530 -10.82223 -10.62572 -10.35117 -9.65202 -9.41833 -8.56683 -8.50239 -7.50479 -6.13151 -4.17497 1.44276 1.47657 3.29511 3.32916 3.34744 3.42115 3.85354 4.03413 4.39605 4.82694 4.94730 5.15980 5.23934 5.34901 5.43933 5.54564 5.56092 5.66549 5.85512 5.97885 6.06738 6.39352 6.45460 6.57708 6.68382 6.76010 7.32525 7.48567 7.74642 7.84528 8.14333 8.85134 9.46382 10.98440 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.069000 B = 0.006124 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.698417 B = 4571.348449 C = 4860.439842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.109 4.109 5 C 0.034 3.966 6 C 0.039 3.961 7 C -0.112 4.112 8 O -0.312 6.312 9 C 0.243 3.757 10 H 0.086 0.914 11 C 0.022 3.978 12 C -0.524 4.524 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.902 3.098 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 O -0.290 6.290 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 6.317 2.947 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.128 4.128 5 C -0.012 4.012 6 C -0.007 4.007 7 C -0.130 4.130 8 O -0.228 6.228 9 C 0.152 3.848 10 H 0.104 0.896 11 C -0.015 4.015 12 C -0.562 4.562 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.730 3.270 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 O -0.206 6.206 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.382 6.083 2.730 15.852 hybrid contribution 1.131 0.212 0.309 1.191 sum -13.251 6.295 3.039 14.981 Atomic orbital electron populations 1.20685 0.90635 1.02610 1.02213 1.19499 0.95944 0.91998 1.01869 1.20651 0.92539 0.97663 1.02870 1.20017 0.93369 0.95258 1.04178 1.20153 0.84435 0.94846 1.01755 1.20012 0.92206 0.86629 1.01810 1.19841 0.89158 0.98748 1.05298 1.87464 1.19347 1.31597 1.84430 1.25889 0.84784 0.75158 0.98955 0.89639 1.19446 0.88618 0.96353 0.97040 1.20867 0.89780 1.23116 1.22431 0.92036 1.24972 0.99443 0.94856 0.94843 1.69950 1.26905 1.28637 1.27435 0.86486 0.82198 0.79287 0.79074 1.20022 1.21102 1.19999 1.87594 1.18432 1.30668 1.83904 0.91284 0.91635 0.91546 0.85217 0.85139 0.85332 0.93237 0.94416 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.01 36.01 0.36 -0.56 15 2 C -0.09 -1.18 5.88 -104.62 -0.62 -1.80 15 3 C -0.12 -1.52 9.69 -39.58 -0.38 -1.90 15 4 C -0.11 -1.70 10.06 -39.47 -0.40 -2.10 15 5 C 0.03 0.66 7.15 -39.08 -0.28 0.38 15 6 C 0.04 0.75 7.15 -39.08 -0.28 0.47 15 7 C -0.11 -1.71 9.71 -39.47 -0.38 -2.09 15 8 O -0.31 -6.86 11.10 -45.70 -0.51 -7.36 15 9 C 0.24 5.63 4.07 37.16 0.15 5.78 15 10 H 0.09 1.86 8.14 -51.93 -0.42 1.44 15 11 C 0.02 0.60 5.12 -27.88 -0.14 0.46 15 12 C -0.52 -14.90 9.03 -34.44 -0.31 -15.21 15 13 H 0.06 1.70 7.74 -52.49 -0.41 1.29 15 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 15 N -0.89 -26.58 13.29 55.43 0.74 -25.84 15 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 15 17 H -0.27 -6.41 7.11 56.52 0.40 -6.00 15 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 19 H -0.27 -6.51 7.11 56.52 0.40 -6.10 15 20 O -0.29 -6.72 11.02 -45.68 -0.50 -7.23 15 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.06 0.52 8.09 -51.93 -0.42 0.10 15 23 H 0.07 0.48 8.08 -51.93 -0.42 0.06 15 24 H 0.13 1.22 8.06 -52.49 -0.42 0.80 15 25 H 0.13 1.77 8.06 -52.48 -0.42 1.35 15 26 H 0.13 1.70 8.06 -52.49 -0.42 1.27 15 27 H 0.05 1.36 8.14 -51.93 -0.42 0.94 15 28 H 0.04 1.09 8.14 -51.93 -0.42 0.66 15 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 LS Contribution 258.55 15.07 3.90 3.90 Total: -1.00 -31.05 258.55 -7.12 -38.17 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -3.34 Total: -3.29 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.38 Total: -14.92 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.01 Total: -14.59 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.05 -7.12 -38.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546603.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.914 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds