Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38250 * 119.92638 * 2 1 4 4 C 1.38232 * 120.14014 * 180.02562 * 3 2 1 5 5 C 1.38550 * 120.03256 * 359.97438 * 4 3 2 6 6 C 1.39265 * 119.82402 * 0.02562 * 5 4 3 7 7 C 1.38231 * 119.92433 * 180.25019 * 2 1 3 8 8 O 1.36505 * 108.63886 * 179.97438 * 6 5 4 9 9 C 1.43986 * 105.48229 * 17.26940 * 8 6 5 10 10 H 1.09007 * 110.57075 * 91.45379 * 9 8 6 11 11 C 1.53001 * 110.56910 * 214.17524 * 9 8 6 12 12 C 1.50699 * 109.46993 * 185.00489 * 11 9 8 13 13 H 1.07997 * 120.00407 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99795 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99926 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47188 * 60.00055 * 16 14 12 18 18 H 1.48498 * 109.46998 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46945 * 299.99982 * 16 14 12 20 20 O 1.36496 * 131.53367 * 179.97438 * 5 4 3 21 21 H 1.08999 * 109.47260 * 89.99647 * 1 2 3 22 22 H 1.08999 * 109.47150 * 209.99543 * 1 2 3 23 23 H 1.09000 * 109.46651 * 330.00076 * 1 2 3 24 24 H 1.08002 * 119.92912 * 0.02562 * 3 2 1 25 25 H 1.08003 * 119.98952 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.99380 * 0.08296 * 7 2 1 27 27 H 1.09003 * 109.47210 * 304.99912 * 11 9 8 28 28 H 1.08990 * 109.47390 * 65.00354 * 11 9 8 29 29 H 0.97002 * 120.00511 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1968 1.1982 0.0000 4 6 3.5791 1.2033 -0.0005 5 6 4.2770 0.0064 -0.0005 6 6 3.5822 -1.2005 -0.0005 7 6 2.1967 -1.1980 -0.0052 8 8 4.4855 -2.2239 -0.0011 9 6 5.7334 -1.6354 0.4105 10 1 5.8502 -1.7025 1.4922 11 6 6.9073 -2.3136 -0.2987 12 6 8.2038 -1.7651 0.2392 13 1 8.1917 -1.0081 1.0095 14 6 9.4054 -2.2288 -0.2527 15 7 9.4202 -3.1502 -1.1910 16 14 11.0125 -1.5484 0.4135 17 1 11.0957 -1.8139 1.8722 18 1 12.1519 -2.2058 -0.2756 19 1 11.0676 -0.0840 0.1730 20 8 5.6156 -0.2607 -0.0014 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6544 2.1321 0.0004 25 1 4.1155 2.1408 -0.0001 26 1 1.6553 -2.1325 -0.0107 27 1 6.8666 -3.3884 -0.1221 28 1 6.8468 -2.1187 -1.3693 29 1 10.2656 -3.4767 -1.5369 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260546603.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = -71.419795 kcal Electronic energy + Delta-G solvation = -14283.717424 eV Core-core repulsion = 11750.578475 eV Total energy + Delta-G solvation = -2533.138949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.07754 -39.14465 -37.17652 -35.53015 -33.14967 -32.03986 -30.78675 -27.35222 -26.43295 -23.95601 -23.23845 -22.71987 -19.11421 -18.88886 -18.23918 -17.89167 -16.85599 -16.09327 -15.48183 -15.40624 -14.80118 -14.56022 -14.43831 -14.29313 -13.97303 -13.62097 -13.25761 -12.97904 -12.85316 -12.65672 -12.60165 -12.14622 -11.93810 -11.57804 -11.34775 -10.70110 -9.78941 -8.90729 -8.32380 -6.46187 0.19317 0.25802 1.37778 1.42478 1.50554 1.92651 2.33234 2.50514 2.63148 3.02766 3.57387 3.73650 3.95316 4.10320 4.12766 4.29771 4.37574 4.55502 4.81947 4.95412 5.04778 5.08448 5.21703 5.22369 5.27615 5.37898 5.54896 5.59546 5.70369 5.94432 6.27306 6.63586 7.22885 8.80468 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.069000 B = 0.006124 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.698417 B = 4571.348449 C = 4860.439842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.078 4.078 3 C -0.104 4.104 4 C -0.107 4.107 5 C -0.014 4.014 6 C -0.001 4.001 7 C -0.113 4.113 8 O -0.332 6.332 9 C 0.254 3.746 10 H 0.095 0.905 11 C 0.029 3.971 12 C -0.545 4.545 13 H 0.065 0.935 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.978 3.022 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.268 1.268 20 O -0.320 6.320 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.177 0.823 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.030 0.970 28 H 0.002 0.998 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 8.362 3.787 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.125 4.125 5 C -0.058 4.058 6 C -0.045 4.045 7 C -0.131 4.131 8 O -0.250 6.250 9 C 0.162 3.838 10 H 0.112 0.888 11 C -0.008 4.008 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.567 5.567 16 Si 0.801 3.199 17 H -0.185 1.185 18 H -0.202 1.202 19 H -0.193 1.193 20 O -0.237 6.237 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.194 0.806 25 H 0.166 0.834 26 H 0.164 0.836 27 H 0.048 0.952 28 H 0.021 0.979 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.368 8.137 3.574 18.625 hybrid contribution 1.487 -0.351 0.005 1.528 sum -14.881 7.786 3.579 17.172 Atomic orbital electron populations 1.20819 0.86994 1.04469 1.03728 1.20107 0.98318 0.90860 0.98518 1.21241 0.91290 0.99671 0.99939 1.20483 0.94724 0.94476 1.02847 1.20629 0.82990 0.96663 1.05515 1.20475 0.93379 0.85755 1.04876 1.20302 0.87534 1.00945 1.04331 1.87371 1.19529 1.32769 1.85282 1.25378 0.84294 0.75546 0.98543 0.88786 1.19207 0.90609 0.95716 0.95265 1.21206 0.90765 1.23468 1.22827 0.91662 1.26010 1.03524 0.94924 0.94887 1.70083 1.28177 1.29845 1.28635 0.85307 0.77008 0.78615 0.78972 1.18524 1.20239 1.19305 1.87481 1.21153 1.30050 1.84987 0.89709 0.90617 0.89016 0.80555 0.83439 0.83573 0.95151 0.97948 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.01 71.24 0.71 -0.56 15 2 C -0.08 -1.69 5.88 -19.86 -0.12 -1.80 15 3 C -0.10 -2.21 9.69 22.27 0.22 -2.00 15 4 C -0.11 -3.13 10.06 22.34 0.22 -2.91 15 5 C -0.01 -0.55 7.15 22.59 0.16 -0.39 15 6 C 0.00 -0.03 7.15 22.59 0.16 0.14 15 7 C -0.11 -3.27 9.71 22.34 0.22 -3.05 15 8 O -0.33 -15.50 11.10 -76.10 -0.84 -16.34 15 9 C 0.25 12.52 4.07 71.98 0.29 12.81 15 10 H 0.09 4.35 8.14 -2.38 -0.02 4.34 15 11 C 0.03 1.68 5.12 29.85 0.15 1.83 15 12 C -0.55 -32.24 9.03 25.60 0.23 -32.01 15 13 H 0.07 3.71 7.74 -2.91 -0.02 3.69 15 14 C 0.01 0.32 5.46 84.66 0.46 0.78 15 15 N -0.93 -57.19 13.29 21.45 0.28 -56.91 15 16 Si 0.98 44.73 29.54 68.60 2.03 46.76 15 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 20 O -0.32 -15.61 11.02 -76.01 -0.84 -16.45 15 21 H 0.08 0.88 8.14 -2.39 -0.02 0.87 15 22 H 0.07 0.84 8.09 -2.39 -0.02 0.82 15 23 H 0.09 0.75 8.08 -2.39 -0.02 0.73 15 24 H 0.18 2.17 8.06 -2.91 -0.02 2.15 15 25 H 0.15 3.71 8.06 -2.91 -0.02 3.69 15 26 H 0.15 3.60 8.06 -2.91 -0.02 3.58 15 27 H 0.03 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.00 0.13 8.14 -2.39 -0.02 0.12 15 29 H 0.27 15.44 8.31 -92.71 -0.77 14.67 15 Total: -1.00 -71.45 258.55 4.49 -66.97 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.14 Total: 3.13 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 2.72 Total: -27.16 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.68 Total: -32.79 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.45 4.49 -66.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546603.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.455 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds