Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.25554 * 2 1 4 4 C 1.54107 * 109.27273 * 119.50857 * 2 1 3 5 5 S 1.83279 * 101.11950 * 148.83573 * 4 2 1 6 6 C 1.77477 * 96.63559 * 335.06129 * 5 4 2 7 7 C 1.38251 * 130.36724 * 195.26264 * 6 5 4 8 8 C 1.40492 * 119.96491 * 179.68301 * 7 6 5 9 9 C 1.41413 * 120.60112 * 179.69696 * 8 7 6 10 10 H 1.08004 * 119.99572 * 155.45559 * 9 8 7 11 11 C 1.39920 * 120.00196 * 335.45043 * 9 8 7 12 12 N 1.30833 * 119.99977 * 342.83710 * 11 9 8 13 13 Si 1.86801 * 120.00018 * 162.83659 * 11 9 8 14 14 H 1.48497 * 109.47043 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47008 * 120.00050 * 13 11 9 16 16 H 1.48498 * 109.47099 * 240.00280 * 13 11 9 17 17 C 1.40801 * 118.79312 * 359.72371 * 8 7 6 18 18 C 1.37040 * 120.25584 * 0.34498 * 17 8 7 19 19 C 1.39362 * 108.25818 * 15.34001 * 6 5 4 20 20 H 1.09005 * 109.47638 * 301.93732 * 1 2 3 21 21 H 1.09000 * 109.47163 * 61.94515 * 1 2 3 22 22 H 1.09000 * 109.47025 * 181.94204 * 1 2 3 23 23 H 1.09003 * 111.09016 * 30.87457 * 4 2 1 24 24 H 1.08992 * 111.12922 * 266.80957 * 4 2 1 25 25 H 1.07992 * 120.01475 * 359.70378 * 7 6 5 26 26 H 0.96999 * 119.99864 * 179.97438 * 12 11 9 27 27 H 1.07996 * 119.87257 * 180.37388 * 17 8 7 28 28 H 1.08002 * 119.29018 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8895 1.0290 0.0000 4 6 2.0387 -0.7165 1.2660 5 16 3.6080 -1.4406 0.6560 6 6 3.1518 -1.5044 -1.0580 7 6 3.7248 -2.1912 -2.1122 8 6 3.1722 -2.0885 -3.3997 9 6 3.7511 -2.7801 -4.4889 10 1 3.1496 -3.0319 -5.3498 11 6 5.1033 -3.1380 -4.4512 12 7 5.9088 -2.5623 -3.5960 13 14 5.7583 -4.4379 -5.6220 14 1 4.6532 -4.9309 -6.4827 15 1 6.8220 -3.8467 -6.4730 16 1 6.3205 -5.5691 -4.8412 17 6 2.0318 -1.2840 -3.5861 18 6 1.4810 -0.6109 -2.5270 19 6 2.0315 -0.6962 -1.2420 20 1 -0.3634 0.5436 0.8721 21 1 -0.3633 0.4833 -0.9069 22 1 -0.3633 -1.0271 0.0348 23 1 1.3442 -1.4950 1.5819 24 1 2.2218 -0.0066 2.0725 25 1 4.5965 -2.8066 -1.9458 26 1 6.8461 -2.8107 -3.5697 27 1 1.5891 -1.1974 -4.5673 28 1 0.6065 0.0022 -2.6877 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260547057.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = 2.776668 kcal Electronic energy + Delta-G solvation = -12406.795488 eV Core-core repulsion = 10319.626810 eV Total energy + Delta-G solvation = -2087.168678 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.04512 -35.20946 -33.11960 -29.65553 -29.13442 -26.96516 -25.32966 -21.81203 -21.15330 -19.44566 -17.51208 -16.12485 -15.09648 -15.01227 -14.08870 -13.87590 -13.55482 -12.74303 -12.53461 -12.12313 -11.96982 -11.81354 -11.52859 -11.23727 -11.07863 -10.85650 -10.56346 -10.39244 -9.93378 -9.68031 -9.34852 -9.07142 -8.44807 -7.40059 -6.88530 -6.45807 -4.44620 2.39358 2.62516 2.88518 3.04510 3.08789 3.11058 3.24051 3.87741 4.46319 5.12157 5.25770 5.48543 5.59233 5.74321 5.87196 5.93938 6.16021 6.26691 6.39031 6.56870 6.72736 6.96788 7.05283 7.21410 7.34492 7.67900 7.80847 7.92010 8.13069 8.47275 8.77929 8.82204 10.10039 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.045507 B = 0.008657 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.147016 B = 3233.709773 C = 3736.827478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.033 4.033 3 H 0.071 0.929 4 C -0.076 4.076 5 S -0.207 6.207 6 C -0.042 4.042 7 C -0.133 4.133 8 C 0.122 3.878 9 C -0.455 4.455 10 H 0.082 0.918 11 C 0.074 3.926 12 N -0.786 5.786 13 Si 0.910 3.090 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.271 1.271 17 C -0.223 4.223 18 C -0.062 4.062 19 C -0.237 4.237 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.283 0.717 27 H 0.097 0.903 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 1.686 4.271 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 H 0.089 0.911 4 C -0.224 4.224 5 S 0.033 5.967 6 C -0.153 4.153 7 C -0.157 4.157 8 C 0.117 3.883 9 C -0.484 4.484 10 H 0.101 0.899 11 C -0.144 4.144 12 N -0.411 5.411 13 Si 0.734 3.266 14 H -0.183 1.183 15 H -0.199 1.199 16 H -0.196 1.196 17 C -0.243 4.243 18 C -0.082 4.082 19 C -0.242 4.242 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.141 0.859 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.566 1.377 5.081 6.359 hybrid contribution -0.581 -0.152 -1.180 1.324 sum -4.148 1.224 3.901 5.824 Atomic orbital electron populations 1.21818 0.94926 1.01665 1.00974 1.20135 0.95602 0.98836 0.90603 0.91104 1.24212 0.96612 1.01740 0.99881 1.85630 1.23194 1.81995 1.05930 1.21523 0.98481 1.01915 0.93426 1.20670 1.02407 1.02453 0.90210 1.17481 0.90235 0.88848 0.91744 1.19610 0.94415 1.31554 1.02820 0.89943 1.25966 0.97037 0.95513 0.95930 1.69830 1.05690 1.34014 1.31558 0.86228 0.79354 0.80648 0.80358 1.18267 1.19880 1.19575 1.20834 1.02365 1.04168 0.96964 1.20157 0.97752 0.98798 0.91470 1.19938 1.01573 1.08279 0.94438 0.93382 0.92475 0.92663 0.89561 0.88499 0.85878 0.90624 0.88439 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.78 37.16 0.33 -1.65 15 2 C -0.03 -0.58 3.13 -91.07 -0.28 -0.86 15 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 4 C -0.08 -1.25 7.02 37.74 0.27 -0.99 15 5 S -0.21 -4.36 23.08 -107.50 -2.48 -6.84 15 6 C -0.04 -1.02 6.46 -39.16 -0.25 -1.28 15 7 C -0.13 -3.55 8.72 -38.73 -0.34 -3.89 15 8 C 0.12 3.24 5.57 -106.87 -0.60 2.64 15 9 C -0.45 -11.88 9.08 -37.74 -0.34 -12.23 15 10 H 0.08 2.05 7.90 -52.48 -0.41 1.63 15 11 C 0.07 1.85 5.16 -17.35 -0.09 1.76 15 12 N -0.79 -20.44 10.95 55.55 0.61 -19.83 15 13 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 15 14 H -0.26 -5.16 7.11 56.52 0.40 -4.75 15 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 16 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 17 C -0.22 -5.39 9.76 -39.05 -0.38 -5.77 15 18 C -0.06 -1.38 9.42 -39.34 -0.37 -1.75 15 19 C -0.24 -5.26 5.60 -103.40 -0.58 -5.84 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.06 0.82 7.05 -51.93 -0.37 0.45 15 22 H 0.05 0.82 8.12 -51.93 -0.42 0.40 15 23 H 0.09 1.31 7.92 -51.93 -0.41 0.90 15 24 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.12 3.45 6.18 -52.49 -0.32 3.13 15 26 H 0.28 6.67 8.30 -40.82 -0.34 6.33 15 27 H 0.10 2.18 8.06 -52.49 -0.42 1.76 15 28 H 0.09 1.71 7.08 -52.49 -0.37 1.34 15 LS Contribution 248.68 15.07 3.75 3.75 Total: -1.00 -27.45 248.68 -8.93 -36.38 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.13 Total: 2.99 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -2.64 Total: -29.84 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.61 Total: -19.83 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.48 Total: -6.84 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.45 -8.93 -36.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260547057.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.161 kcal (2) G-P(sol) polarization free energy of solvation -27.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds