Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.25554 * 2 1 4 4 C 1.54107 * 109.27273 * 119.50857 * 2 1 3 5 5 S 1.83279 * 101.11950 * 148.83573 * 4 2 1 6 6 C 1.77477 * 96.63559 * 335.06129 * 5 4 2 7 7 C 1.38251 * 130.36724 * 195.26264 * 6 5 4 8 8 C 1.40492 * 119.96491 * 179.68301 * 7 6 5 9 9 C 1.41413 * 120.60112 * 179.69696 * 8 7 6 10 10 H 1.08004 * 119.99572 * 155.45559 * 9 8 7 11 11 C 1.39920 * 120.00196 * 335.45043 * 9 8 7 12 12 N 1.30833 * 119.99977 * 342.83710 * 11 9 8 13 13 Si 1.86801 * 120.00018 * 162.83659 * 11 9 8 14 14 H 1.48497 * 109.47043 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47008 * 120.00050 * 13 11 9 16 16 H 1.48498 * 109.47099 * 240.00280 * 13 11 9 17 17 C 1.40801 * 118.79312 * 359.72371 * 8 7 6 18 18 C 1.37040 * 120.25584 * 0.34498 * 17 8 7 19 19 C 1.39362 * 108.25818 * 15.34001 * 6 5 4 20 20 H 1.09005 * 109.47638 * 301.93732 * 1 2 3 21 21 H 1.09000 * 109.47163 * 61.94515 * 1 2 3 22 22 H 1.09000 * 109.47025 * 181.94204 * 1 2 3 23 23 H 1.09003 * 111.09016 * 30.87457 * 4 2 1 24 24 H 1.08992 * 111.12922 * 266.80957 * 4 2 1 25 25 H 1.07992 * 120.01475 * 359.70378 * 7 6 5 26 26 H 0.96999 * 119.99864 * 179.97438 * 12 11 9 27 27 H 1.07996 * 119.87257 * 180.37388 * 17 8 7 28 28 H 1.08002 * 119.29018 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8895 1.0290 0.0000 4 6 2.0387 -0.7165 1.2660 5 16 3.6080 -1.4406 0.6560 6 6 3.1518 -1.5044 -1.0580 7 6 3.7248 -2.1912 -2.1122 8 6 3.1722 -2.0885 -3.3997 9 6 3.7511 -2.7801 -4.4889 10 1 3.1496 -3.0319 -5.3498 11 6 5.1033 -3.1380 -4.4512 12 7 5.9088 -2.5623 -3.5960 13 14 5.7583 -4.4379 -5.6220 14 1 4.6532 -4.9309 -6.4827 15 1 6.8220 -3.8467 -6.4730 16 1 6.3205 -5.5691 -4.8412 17 6 2.0318 -1.2840 -3.5861 18 6 1.4810 -0.6109 -2.5270 19 6 2.0315 -0.6962 -1.2420 20 1 -0.3634 0.5436 0.8721 21 1 -0.3633 0.4833 -0.9069 22 1 -0.3633 -1.0271 0.0348 23 1 1.3442 -1.4950 1.5819 24 1 2.2218 -0.0066 2.0725 25 1 4.5965 -2.8066 -1.9458 26 1 6.8461 -2.8107 -3.5697 27 1 1.5891 -1.1974 -4.5673 28 1 0.6065 0.0022 -2.6877 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260547057.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = -11.088761 kcal Electronic energy + Delta-G solvation = -12407.396738 eV Core-core repulsion = 10319.626810 eV Total energy + Delta-G solvation = -2087.769928 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79801 -36.85035 -34.87571 -31.45157 -30.95409 -28.24283 -27.15546 -23.48125 -22.95330 -21.06537 -19.37732 -17.90152 -16.73019 -16.54878 -15.72290 -15.59779 -15.23633 -14.42393 -13.89383 -13.77622 -13.62501 -13.29889 -13.13794 -12.84374 -12.71017 -12.42752 -12.15260 -11.92380 -11.60503 -11.37577 -11.15909 -10.79085 -10.24036 -9.27863 -8.73370 -8.19790 -6.40387 0.71806 0.92964 0.99887 1.36456 1.45712 1.52826 1.59023 2.17695 2.61872 3.56941 3.79259 3.96358 4.17922 4.43104 4.58215 4.59010 4.71229 4.86785 5.01929 5.07777 5.10383 5.27016 5.30589 5.42202 5.47287 5.82476 5.92825 6.02016 6.25280 6.55184 6.85423 6.91784 8.27677 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.045507 B = 0.008657 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.147016 B = 3233.709773 C = 3736.827478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 H 0.081 0.919 4 C -0.057 4.057 5 S -0.238 6.238 6 C -0.066 4.066 7 C -0.165 4.165 8 C 0.089 3.911 9 C -0.491 4.491 10 H 0.084 0.916 11 C 0.032 3.968 12 N -0.826 5.826 13 Si 0.986 3.014 14 H -0.253 1.253 15 H -0.264 1.264 16 H -0.267 1.267 17 C -0.236 4.236 18 C -0.064 4.064 19 C -0.230 4.230 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.104 0.896 24 H 0.135 0.865 25 H 0.096 0.904 26 H 0.288 0.712 27 H 0.109 0.891 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 2.551 5.274 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.055 4.055 3 H 0.099 0.901 4 C -0.205 4.205 5 S 0.002 5.998 6 C -0.178 4.178 7 C -0.189 4.189 8 C 0.085 3.915 9 C -0.521 4.521 10 H 0.102 0.898 11 C -0.183 4.183 12 N -0.452 5.452 13 Si 0.806 3.194 14 H -0.176 1.176 15 H -0.189 1.189 16 H -0.191 1.191 17 C -0.256 4.256 18 C -0.084 4.084 19 C -0.236 4.236 20 H 0.101 0.899 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.122 0.878 24 H 0.153 0.847 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.265 2.252 6.093 8.362 hybrid contribution -0.160 -0.303 -1.344 1.387 sum -5.426 1.949 4.750 7.470 Atomic orbital electron populations 1.21775 0.91925 1.02108 1.02915 1.20239 0.98010 0.98585 0.88663 0.90079 1.24471 0.93358 1.02498 1.00156 1.85641 1.27370 1.82773 1.04023 1.21871 0.99209 1.01875 0.94863 1.20543 1.02724 1.04153 0.91530 1.17853 0.91588 0.90016 0.92089 1.19879 0.95497 1.33428 1.03259 0.89758 1.26867 0.96784 0.97081 0.97555 1.69909 1.06201 1.35576 1.33469 0.85104 0.78764 0.77504 0.78030 1.17588 1.18887 1.19148 1.21103 1.01948 1.04165 0.98405 1.20538 0.98504 0.98316 0.90994 1.20669 1.00016 1.06550 0.96352 0.89851 0.92131 0.93091 0.87773 0.84699 0.88597 0.90115 0.87313 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.78 71.98 0.63 -2.49 15 2 C -0.04 -1.14 3.13 -11.08 -0.03 -1.17 15 3 H 0.08 2.46 8.14 -2.39 -0.02 2.45 15 4 C -0.06 -1.66 7.02 72.36 0.51 -1.15 15 5 S -0.24 -9.83 23.08 -56.49 -1.30 -11.13 15 6 C -0.07 -3.30 6.46 22.54 0.15 -3.16 15 7 C -0.16 -9.26 8.72 22.82 0.20 -9.06 15 8 C 0.09 4.94 5.57 -21.32 -0.12 4.82 15 9 C -0.49 -26.83 9.08 23.46 0.21 -26.62 15 10 H 0.08 4.36 7.90 -2.91 -0.02 4.34 15 11 C 0.03 1.66 5.16 85.25 0.44 2.10 15 12 N -0.83 -45.09 10.95 21.82 0.24 -44.85 15 13 Si 0.99 38.78 29.59 68.60 2.03 40.81 15 14 H -0.25 -9.55 7.11 99.48 0.71 -8.84 15 15 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 17 C -0.24 -11.55 9.76 22.62 0.22 -11.32 15 18 C -0.06 -2.75 9.42 22.43 0.21 -2.54 15 19 C -0.23 -9.88 5.60 -19.07 -0.11 -9.99 15 20 H 0.08 1.48 8.14 -2.38 -0.02 1.46 15 21 H 0.06 1.44 7.05 -2.39 -0.02 1.42 15 22 H 0.05 1.29 8.12 -2.39 -0.02 1.27 15 23 H 0.10 2.70 7.92 -2.39 -0.02 2.68 15 24 H 0.13 2.96 8.14 -2.39 -0.02 2.94 15 25 H 0.10 5.78 6.18 -2.91 -0.02 5.76 15 26 H 0.29 14.24 8.30 -92.71 -0.77 13.47 15 27 H 0.11 4.91 8.06 -2.91 -0.02 4.89 15 28 H 0.13 4.41 7.08 -2.91 -0.02 4.39 15 Total: -1.00 -62.66 248.68 4.43 -58.23 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.15 Total: 17.52 kcal Atomic # 6 Polarization: -62.89 SS G_CDS: 2.31 Total: -60.58 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.24 Total: -44.85 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: -9.83 SS G_CDS: -1.30 Total: -11.13 kcal Total: -62.66 4.43 -58.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260547057.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.145 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds