Wall clock time and date at job start Mon Mar 30 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99893 * 2 1 4 4 H 1.48504 * 109.47143 * 269.99859 * 3 2 1 5 5 H 1.48496 * 109.47380 * 29.99997 * 3 2 1 6 6 H 1.48503 * 109.47359 * 150.00082 * 3 2 1 7 7 C 1.37872 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99731 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00517 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47423 * 179.97438 * 9 7 2 11 11 C 1.38231 * 120.00119 * 179.97438 * 10 9 7 12 12 N 1.32851 * 118.70649 * 359.97438 * 11 10 9 13 13 C 1.32356 * 120.97622 * 180.02562 * 12 11 10 14 14 C 1.38835 * 118.36739 * 359.97438 * 13 12 11 15 15 C 1.46322 * 137.68907 * 179.97438 * 14 13 12 16 16 N 1.30121 * 105.25673 * 180.02562 * 15 14 13 17 17 O 1.20982 * 113.49325 * 359.97438 * 16 15 14 18 18 C 1.34088 * 113.00375 * 359.97438 * 17 16 15 19 19 N 1.32321 * 136.38690 * 179.97438 * 18 17 16 20 20 H 0.97005 * 120.00136 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47488 * 59.99219 * 9 7 2 22 22 H 1.09003 * 109.47120 * 299.99868 * 9 7 2 23 23 H 0.97000 * 120.00394 * 359.97438 * 10 9 7 24 24 H 1.07997 * 120.81240 * 180.28220 * 13 12 11 25 25 H 1.08000 * 127.37537 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7423 -4.9159 0.0011 12 7 0.4310 -5.1291 0.0021 13 6 -0.0592 -6.3585 0.0032 14 6 0.8312 -7.4237 0.0026 15 6 0.7695 -8.8856 0.0037 16 7 2.0092 -9.2807 0.0028 17 8 2.8056 -8.3700 0.0008 18 6 2.2214 -7.1630 -0.0005 19 7 2.6256 -5.9031 -0.0022 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 3.1567 -3.4354 0.0002 24 1 -1.1257 -6.5288 -0.0006 25 1 -0.1157 -9.5044 0.0058 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260559059.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:42 Heat of formation + Delta-G solvation = 93.695026 kcal Electronic energy + Delta-G solvation = -13824.314739 eV Core-core repulsion = 11227.088113 eV Total energy + Delta-G solvation = -2597.226626 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.64669 -41.52944 -37.16957 -35.25450 -34.63324 -34.08226 -31.69157 -28.93796 -26.87925 -25.18562 -23.95006 -23.15639 -20.17036 -19.85228 -18.79732 -18.60752 -17.74994 -16.80035 -16.40148 -16.10563 -15.22444 -15.10429 -14.63017 -14.27692 -14.08403 -13.26781 -12.84016 -12.78339 -12.64717 -12.23244 -11.94461 -11.50636 -11.48087 -10.98761 -10.63782 -10.33333 -9.06749 -8.29787 -6.44436 -0.35347 -0.00718 0.95728 1.18973 1.44657 1.45046 1.56425 2.24783 2.42808 2.66367 2.96320 3.05806 3.22824 3.43802 3.56964 3.91348 4.35155 4.88275 4.95995 5.12977 5.29276 5.44450 5.65839 5.80322 6.03631 6.53298 6.65474 7.03415 7.22322 7.32632 8.81362 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.084224 B = 0.005624 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.366797 B = 4977.480976 C = 5294.703555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.286 3.714 10 N -0.664 5.664 11 C 0.593 3.407 12 N -0.586 5.586 13 C 0.292 3.708 14 C -0.359 4.359 15 C 0.115 3.885 16 N -0.360 5.360 17 O 0.041 5.959 18 C 0.277 3.723 19 N -0.594 5.594 20 H 0.270 0.730 21 H 0.007 0.993 22 H 0.008 0.992 23 H 0.414 0.586 24 H 0.231 0.769 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -13.366 0.010 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.603 4.603 8 H 0.092 0.908 9 C 0.164 3.836 10 N -0.296 5.296 11 C 0.235 3.765 12 N -0.309 5.309 13 C 0.116 3.884 14 C -0.372 4.372 15 C -0.076 4.076 16 N -0.075 5.075 17 O -0.002 6.002 18 C 0.084 3.916 19 N -0.332 5.332 20 H 0.079 0.921 21 H 0.025 0.975 22 H 0.026 0.974 23 H 0.251 0.749 24 H 0.247 0.753 25 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -0.835 -13.204 0.011 13.231 hybrid contribution 0.102 0.800 -0.009 0.806 sum -0.733 -12.405 0.002 12.426 Atomic orbital electron populations 1.70078 1.07678 1.28605 1.49432 1.25839 0.95798 1.03121 0.93808 0.85268 0.78462 0.77640 0.78545 1.19709 1.20536 1.18771 1.21577 0.94154 0.90985 1.53610 0.90844 1.18722 0.87571 0.81592 0.95746 1.45000 1.11111 1.00410 1.73049 1.19431 0.84456 0.86360 0.86232 1.68504 1.12799 1.25450 1.24150 1.23290 1.02008 0.82688 0.80404 1.21905 0.95759 0.97613 1.21889 1.26408 0.96239 0.90058 0.94925 1.73604 1.03207 1.09726 1.21002 1.84854 1.32916 1.07855 1.74593 1.21553 0.89844 0.88071 0.92125 1.66390 1.39729 0.96641 1.30446 0.92060 0.97469 0.97440 0.74877 0.75259 0.72111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 13.29 21.45 0.28 -52.08 15 2 C 0.02 0.81 5.46 84.65 0.46 1.28 15 3 Si 0.98 41.67 29.54 68.60 2.03 43.70 15 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.57 -30.16 9.28 25.60 0.24 -29.92 15 8 H 0.07 3.70 7.60 -2.91 -0.02 3.68 15 9 C 0.29 14.69 5.37 85.63 0.46 15.14 15 10 N -0.66 -29.29 5.69 -354.70 -2.02 -31.31 15 11 C 0.59 24.34 8.40 261.42 2.19 26.54 15 12 N -0.59 -21.96 9.54 -197.66 -1.89 -23.84 15 13 C 0.29 7.55 11.37 84.76 0.96 8.52 15 14 C -0.36 -9.32 6.61 -20.24 -0.13 -9.45 15 15 C 0.11 2.11 12.45 87.05 1.08 3.19 15 16 N -0.36 -9.25 11.95 -53.03 -0.63 -9.89 15 17 O 0.04 1.29 11.11 71.10 0.79 2.08 15 18 C 0.28 9.39 8.82 85.41 0.75 10.14 15 19 N -0.59 -23.27 10.47 -311.39 -3.26 -26.53 15 20 H 0.27 14.39 8.31 -92.70 -0.77 13.61 15 21 H 0.01 0.41 8.14 -2.39 -0.02 0.39 15 22 H 0.01 0.43 8.14 -2.39 -0.02 0.41 15 23 H 0.41 17.07 8.43 -92.71 -0.78 16.29 15 24 H 0.23 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.26 1.49 8.06 -2.91 -0.02 1.47 15 Total: -1.00 -66.79 237.38 1.78 -65.00 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.46 Total: 7.43 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 6.02 Total: 25.43 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -7.51 Total: -143.65 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.79 Total: 2.08 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -66.79 1.78 -65.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559059.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.700 kcal (2) G-P(sol) polarization free energy of solvation -66.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds