Wall clock time and date at job start Mon Mar 30 2020 02:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00227 * 2 1 4 4 H 1.48497 * 109.47342 * 269.99685 * 3 2 1 5 5 H 1.48502 * 109.46868 * 29.99979 * 3 2 1 6 6 H 1.48503 * 109.46908 * 149.99783 * 3 2 1 7 7 C 1.37882 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00301 * 180.02562 * 7 2 1 10 10 C 1.50696 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.35027 * 126.41757 * 84.98059 * 10 9 7 12 12 N 1.33574 * 108.64643 * 179.97438 * 11 10 9 13 13 C 1.32578 * 109.18246 * 359.97438 * 12 11 10 14 14 C 1.40875 * 132.32239 * 180.02562 * 13 12 11 15 15 C 1.36103 * 119.38534 * 179.97438 * 14 13 12 16 16 C 1.40303 * 119.70748 * 0.03488 * 15 14 13 17 17 C 1.35372 * 120.26553 * 359.94296 * 16 15 14 18 18 F 1.35102 * 119.72276 * 180.02562 * 17 16 15 19 19 N 1.36501 * 120.55252 * 0.03810 * 17 16 15 20 20 H 0.97003 * 119.99919 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47027 * 59.99968 * 9 7 2 22 22 H 1.08999 * 109.47211 * 300.00232 * 9 7 2 23 23 H 1.08003 * 125.67667 * 0.02562 * 11 10 9 24 24 H 1.08006 * 120.31238 * 359.69364 * 14 13 12 25 25 H 1.07991 * 120.15183 * 179.97438 * 15 14 13 26 26 H 1.08006 * 119.86805 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0010 11 6 4.1917 -3.4022 -1.0815 12 7 4.6497 -4.5895 -0.6755 13 6 4.7702 -4.5816 0.6447 14 6 5.2021 -5.5582 1.5636 15 6 5.2221 -5.2628 2.8920 16 6 4.8130 -3.9936 3.3283 17 6 4.4009 -3.0648 2.4340 18 9 4.0098 -1.8460 2.8661 19 7 4.3768 -3.3494 1.0992 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6802 0.8912 22 1 3.8752 -0.6805 -0.8888 23 1 3.9970 -3.1187 -2.1053 24 1 5.5101 -6.5339 1.2176 25 1 5.5505 -6.0023 3.6073 26 1 4.8275 -3.7566 4.3820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260591947.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:17 Heat of formation + Delta-G solvation = 44.900556 kcal Electronic energy + Delta-G solvation = -14384.092038 eV Core-core repulsion = 11764.829563 eV Total energy + Delta-G solvation = -2619.262474 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.98437 -42.29640 -36.99128 -33.74887 -32.82645 -30.77057 -29.62923 -26.96123 -23.51485 -23.01441 -22.10588 -20.47280 -17.46287 -17.11883 -17.01541 -16.24580 -16.02192 -15.20907 -14.53614 -14.29628 -14.11163 -13.18748 -12.97031 -12.50070 -12.34213 -12.02387 -11.66745 -11.34095 -10.88661 -10.71874 -10.59882 -10.10663 -9.68945 -9.47786 -8.68053 -8.44416 -7.20926 -6.16807 -4.18104 0.85883 1.54363 2.60199 3.22086 3.27386 3.30487 3.32211 3.76626 4.27736 4.32594 4.52609 4.78928 5.00783 5.13732 5.20833 5.70262 5.86564 5.91548 6.02761 6.13509 6.25948 6.71438 6.74357 7.09123 7.10715 7.29634 7.52952 8.23290 8.37299 8.85771 9.41444 10.95858 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.009727 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.325374 B = 2877.854016 C = 3252.101705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.073 0.927 9 C 0.049 3.951 10 C 0.013 3.987 11 C 0.015 3.985 12 N -0.485 5.485 13 C 0.213 3.787 14 C -0.085 4.085 15 C -0.095 4.095 16 C -0.187 4.187 17 C 0.289 3.711 18 F -0.101 7.101 19 N -0.390 5.390 20 H 0.266 0.734 21 H 0.031 0.969 22 H 0.044 0.956 23 H 0.182 0.818 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 -6.867 5.947 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.091 0.909 9 C 0.010 3.990 10 C -0.098 4.098 11 C -0.133 4.133 12 N -0.204 5.204 13 C -0.029 4.029 14 C -0.106 4.106 15 C -0.118 4.118 16 C -0.210 4.210 17 C 0.168 3.832 18 F -0.079 7.079 19 N -0.071 5.071 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.199 0.801 24 H 0.168 0.832 25 H 0.163 0.837 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.895 -7.288 5.390 14.173 hybrid contribution -0.141 1.909 0.568 1.996 sum 10.754 -5.379 5.958 13.420 Atomic orbital electron populations 1.69887 1.06249 1.27189 1.49870 1.24936 0.94751 0.98960 0.94138 0.86832 0.80424 0.83633 0.78863 1.19780 1.20952 1.18977 1.20846 0.87749 0.94864 1.52338 0.90871 1.18411 0.97701 0.84435 0.98423 1.22134 1.05261 0.98630 0.83809 1.22202 1.02939 0.88982 0.99134 1.70682 1.21121 1.22696 1.05937 1.20802 1.05972 0.84991 0.91179 1.20180 1.01307 0.98152 0.90930 1.20676 1.00159 0.95733 0.95280 1.20441 1.07687 0.93480 0.99361 1.17401 1.00683 0.82904 0.82195 1.91690 1.88202 1.40255 1.87772 1.43289 1.44336 1.14648 1.04793 0.92377 0.95084 0.93826 0.80084 0.83200 0.83694 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.96 55.43 0.77 -26.45 15 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 15 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 15 7 C -0.52 -14.80 9.65 -34.44 -0.33 -15.13 15 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.05 1.18 4.29 -29.04 -0.12 1.05 15 10 C 0.01 0.30 6.23 -81.42 -0.51 -0.21 15 11 C 0.02 0.32 11.74 -17.94 -0.21 0.11 15 12 N -0.48 -9.84 11.32 -12.79 -0.14 -9.99 15 13 C 0.21 3.99 7.81 -156.03 -1.22 2.77 15 14 C -0.09 -1.18 10.10 -39.35 -0.40 -1.58 15 15 C -0.09 -1.09 10.06 -39.57 -0.40 -1.49 15 16 C -0.19 -2.48 9.95 -39.83 -0.40 -2.88 15 17 C 0.29 5.22 8.23 -16.50 -0.14 5.08 15 18 F -0.10 -1.97 15.59 2.25 0.04 -1.94 15 19 N -0.39 -7.96 2.95 -58.83 -0.17 -8.14 15 20 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.03 0.76 5.81 -51.93 -0.30 0.46 15 22 H 0.04 1.00 7.57 -51.93 -0.39 0.61 15 23 H 0.18 3.32 8.06 -52.48 -0.42 2.90 15 24 H 0.15 1.63 8.06 -52.48 -0.42 1.21 15 25 H 0.15 1.06 8.06 -52.49 -0.42 0.63 15 26 H 0.16 1.55 8.06 -52.48 -0.42 1.12 15 LS Contribution 237.47 15.07 3.58 3.58 Total: -1.00 -32.44 237.47 -6.39 -38.83 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -1.97 Total: -2.11 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -3.82 Total: -10.22 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.46 Total: -44.58 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.44 -6.39 -38.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260591947.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.735 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds