Wall clock time and date at job start Mon Mar 30 2020 02:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00227 * 2 1 4 4 H 1.48497 * 109.47342 * 269.99685 * 3 2 1 5 5 H 1.48502 * 109.46868 * 29.99979 * 3 2 1 6 6 H 1.48503 * 109.46908 * 149.99783 * 3 2 1 7 7 C 1.37882 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00301 * 180.02562 * 7 2 1 10 10 C 1.50696 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.35027 * 126.41757 * 84.98059 * 10 9 7 12 12 N 1.33574 * 108.64643 * 179.97438 * 11 10 9 13 13 C 1.32578 * 109.18246 * 359.97438 * 12 11 10 14 14 C 1.40875 * 132.32239 * 180.02562 * 13 12 11 15 15 C 1.36103 * 119.38534 * 179.97438 * 14 13 12 16 16 C 1.40303 * 119.70748 * 0.03488 * 15 14 13 17 17 C 1.35372 * 120.26553 * 359.94296 * 16 15 14 18 18 F 1.35102 * 119.72276 * 180.02562 * 17 16 15 19 19 N 1.36501 * 120.55252 * 0.03810 * 17 16 15 20 20 H 0.97003 * 119.99919 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47027 * 59.99968 * 9 7 2 22 22 H 1.08999 * 109.47211 * 300.00232 * 9 7 2 23 23 H 1.08003 * 125.67667 * 0.02562 * 11 10 9 24 24 H 1.08006 * 120.31238 * 359.69364 * 14 13 12 25 25 H 1.07991 * 120.15183 * 179.97438 * 15 14 13 26 26 H 1.08006 * 119.86805 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0137 -2.6150 0.0010 11 6 4.1917 -3.4022 -1.0815 12 7 4.6497 -4.5895 -0.6755 13 6 4.7702 -4.5816 0.6447 14 6 5.2021 -5.5582 1.5636 15 6 5.2221 -5.2628 2.8920 16 6 4.8130 -3.9936 3.3283 17 6 4.4009 -3.0648 2.4340 18 9 4.0098 -1.8460 2.8661 19 7 4.3768 -3.3494 1.0992 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6802 0.8912 22 1 3.8752 -0.6805 -0.8888 23 1 3.9970 -3.1187 -2.1053 24 1 5.5101 -6.5339 1.2176 25 1 5.5505 -6.0023 3.6073 26 1 4.8275 -3.7566 4.3820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260591947.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:17 Heat of formation + Delta-G solvation = 23.825040 kcal Electronic energy + Delta-G solvation = -14385.005941 eV Core-core repulsion = 11764.829563 eV Total energy + Delta-G solvation = -2620.176377 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.34306 -43.71514 -38.25273 -35.60094 -34.46398 -32.57112 -30.93656 -28.61933 -25.06951 -24.56254 -23.57656 -21.99916 -19.15504 -18.87165 -18.39425 -17.72557 -17.32504 -16.43381 -16.31674 -15.88588 -15.58385 -15.01010 -14.51127 -14.16996 -13.93510 -13.29887 -13.12475 -12.79943 -12.53947 -12.48618 -12.16937 -11.85117 -11.66679 -11.21642 -10.86491 -9.82591 -8.64953 -8.38058 -6.45937 -0.36013 0.26672 1.26469 1.31728 1.34394 1.45149 1.79070 2.28243 2.47530 2.93228 3.02226 3.28330 3.54020 3.83501 4.11336 4.29472 4.46996 4.60417 4.76512 4.82133 4.96765 5.13877 5.31197 5.38236 5.56966 5.60518 5.92002 6.13422 6.57231 6.76022 7.17733 8.78384 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.009727 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.325374 B = 2877.854016 C = 3252.101705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.526 4.526 8 H 0.021 0.979 9 C 0.062 3.938 10 C -0.041 4.041 11 C 0.014 3.986 12 N -0.515 5.515 13 C 0.212 3.788 14 C -0.096 4.096 15 C -0.062 4.062 16 C -0.146 4.146 17 C 0.226 3.774 18 F -0.122 7.122 19 N -0.399 5.399 20 H 0.271 0.729 21 H 0.027 0.973 22 H 0.055 0.945 23 H 0.191 0.809 24 H 0.185 0.815 25 H 0.208 0.792 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.295 -7.939 7.974 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.773 3.227 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.564 4.564 8 H 0.039 0.961 9 C 0.024 3.976 10 C -0.152 4.152 11 C -0.135 4.135 12 N -0.235 5.235 13 C -0.031 4.031 14 C -0.116 4.116 15 C -0.085 4.085 16 C -0.168 4.168 17 C 0.106 3.894 18 F -0.101 7.101 19 N -0.078 5.078 20 H 0.080 0.920 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.208 0.792 24 H 0.202 0.798 25 H 0.225 0.775 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.278 -8.368 7.424 17.362 hybrid contribution -0.852 1.976 0.129 2.156 sum 12.426 -6.391 7.554 15.885 Atomic orbital electron populations 1.70043 1.08303 1.28582 1.51405 1.25928 0.95628 1.03295 0.93405 0.85659 0.79244 0.77956 0.79883 1.17992 1.20338 1.17553 1.21003 0.90262 0.92983 1.52179 0.96105 1.18102 0.94528 0.86527 0.98449 1.21808 1.09385 0.98598 0.85443 1.22410 1.02317 0.89259 0.99474 1.70667 1.23227 1.22408 1.07222 1.21769 1.04509 0.85279 0.91518 1.20813 1.01118 0.98439 0.91205 1.21439 0.96329 0.95523 0.95249 1.21262 1.02390 0.92601 1.00508 1.18223 1.05104 0.83951 0.82138 1.91622 1.89005 1.41680 1.87782 1.43408 1.44181 1.14831 1.05404 0.92017 0.95461 0.92736 0.79166 0.79779 0.77537 0.78455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.73 13.96 21.45 0.30 -59.43 15 2 C 0.02 0.92 5.47 84.66 0.46 1.38 15 3 Si 0.95 44.18 27.47 68.60 1.88 46.07 15 4 H -0.26 -11.14 7.11 99.48 0.71 -10.44 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.25 -11.07 6.54 99.48 0.65 -10.41 15 7 C -0.53 -31.57 9.65 25.60 0.25 -31.32 15 8 H 0.02 1.41 7.98 -2.91 -0.02 1.39 15 9 C 0.06 3.13 4.29 29.10 0.12 3.25 15 10 C -0.04 -1.89 6.23 41.01 0.26 -1.63 15 11 C 0.01 0.59 11.74 83.69 0.98 1.57 15 12 N -0.51 -21.13 11.32 -194.38 -2.20 -23.33 15 13 C 0.21 7.74 7.81 134.08 1.05 8.79 15 14 C -0.10 -2.26 10.10 22.42 0.23 -2.03 15 15 C -0.06 -1.04 10.06 22.28 0.22 -0.82 15 16 C -0.15 -3.22 9.95 22.11 0.22 -3.00 15 17 C 0.23 7.94 8.23 83.30 0.69 8.63 15 18 F -0.12 -4.84 15.59 44.97 0.70 -4.14 15 19 N -0.40 -16.40 2.95 -340.05 -1.00 -17.40 15 20 H 0.27 15.81 8.31 -92.71 -0.77 15.04 15 21 H 0.03 1.37 5.81 -2.39 -0.01 1.35 15 22 H 0.05 2.55 7.57 -2.39 -0.02 2.53 15 23 H 0.19 7.39 8.06 -2.91 -0.02 7.36 15 24 H 0.18 3.06 8.06 -2.91 -0.02 3.04 15 25 H 0.21 1.10 8.06 -2.92 -0.02 1.08 15 26 H 0.20 2.71 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -76.97 237.47 5.30 -71.66 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.15 Total: 1.76 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.48 Total: -15.19 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -2.90 Total: -100.16 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.70 Total: -4.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Total: -76.97 5.30 -71.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260591947.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.490 kcal (2) G-P(sol) polarization free energy of solvation -76.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds