Wall clock time and date at job start Mon Mar 30 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99860 * 2 1 4 4 H 1.48498 * 109.47259 * 240.00416 * 3 2 1 5 5 H 1.48507 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46873 * 120.00252 * 3 2 1 7 7 C 1.37875 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99903 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.26899 * 59.30346 * 9 7 2 11 11 C 1.54345 * 110.30418 * 181.37754 * 9 7 2 12 12 C 1.54348 * 102.38635 * 92.67908 * 11 9 7 13 13 C 1.51367 * 105.16440 * 26.33708 * 12 11 9 14 14 C 1.38177 * 109.77770 * 342.82441 * 13 12 11 15 15 C 1.38491 * 119.88058 * 179.97438 * 14 13 12 16 16 C 1.38168 * 120.33588 * 0.03384 * 15 14 13 17 17 C 1.38119 * 119.99920 * 359.97097 * 16 15 14 18 18 C 1.38645 * 119.87070 * 0.03745 * 17 16 15 19 19 O 1.35898 * 119.95443 * 180.02562 * 18 17 16 20 20 H 0.96999 * 120.00247 * 359.97438 * 1 2 3 21 21 H 0.96696 * 114.00036 * 302.07386 * 10 9 7 22 22 H 1.09005 * 110.82442 * 210.90290 * 11 9 7 23 23 H 1.09006 * 110.82283 * 334.45524 * 11 9 7 24 24 H 1.08992 * 110.30472 * 145.25945 * 12 11 9 25 25 H 1.09001 * 110.30148 * 267.32151 * 12 11 9 26 26 H 1.08009 * 119.82964 * 180.02562 * 15 14 13 27 27 H 1.08004 * 120.00411 * 179.97438 * 16 15 14 28 28 H 1.08001 * 120.06788 * 180.02562 * 17 16 15 29 29 H 0.96695 * 114.00129 * 269.93273 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4104 -2.5854 -1.1530 11 6 2.2366 -3.6865 0.0336 12 6 2.3630 -3.9684 1.5458 13 6 1.0656 -3.4759 2.1503 14 6 0.4266 -2.6321 1.2621 15 6 -0.7868 -2.0597 1.6054 16 6 -1.3623 -2.3274 2.8327 17 6 -0.7274 -3.1702 3.7240 18 6 0.4876 -3.7454 3.3847 19 8 1.1135 -4.5753 4.2601 20 1 -0.4850 0.8400 0.0004 21 1 -0.2301 -1.8649 -1.2274 22 1 1.8221 -4.5492 -0.4881 23 1 3.2002 -3.4025 -0.3895 24 1 2.4809 -5.0374 1.7227 25 1 3.2082 -3.4210 1.9633 26 1 -1.2857 -1.4005 0.9104 27 1 -2.3086 -1.8778 3.0951 28 1 -1.1765 -3.3806 4.6834 29 1 1.7202 -4.1252 4.8636 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260593476.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:48 Heat of formation + Delta-G solvation = -90.451246 kcal Electronic energy + Delta-G solvation = -15195.573890 eV Core-core repulsion = 12661.609675 eV Total energy + Delta-G solvation = -2533.964215 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.15696 -38.63763 -36.68224 -35.16599 -34.16396 -30.39212 -29.79757 -28.43534 -25.73185 -23.30588 -21.85840 -21.29873 -19.29711 -18.66406 -17.12633 -16.89044 -16.39507 -16.12799 -15.63189 -15.45306 -14.50133 -14.43203 -13.73173 -13.55964 -13.05992 -12.86266 -12.77796 -12.70994 -12.33921 -12.19004 -12.11216 -11.86222 -11.50064 -11.27077 -10.61779 -10.21065 -9.26340 -9.20262 -8.16355 -6.38105 0.59158 0.68310 1.41282 1.42242 1.49314 2.37008 2.94021 3.06947 3.50785 3.74663 4.01033 4.13307 4.33029 4.49889 4.54046 4.75591 4.84559 4.98675 5.10802 5.17156 5.24569 5.33181 5.51698 5.63688 5.67797 5.90071 6.09603 6.20537 6.22082 6.66917 6.98367 7.31333 7.42687 8.80696 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.011995 C = 0.010915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.976609 B = 2333.665800 C = 2564.588759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.032 3.968 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.262 3.738 10 O -0.599 6.599 11 C -0.105 4.105 12 C -0.054 4.054 13 C -0.156 4.156 14 C -0.074 4.074 15 C -0.109 4.109 16 C -0.127 4.127 17 C -0.163 4.163 18 C 0.094 3.906 19 O -0.504 6.504 20 H 0.271 0.729 21 H 0.375 0.625 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 -2.917 6.552 7.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.170 4.170 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.591 4.591 8 H 0.077 0.923 9 C 0.223 3.777 10 O -0.408 6.408 11 C -0.143 4.143 12 C -0.091 4.091 13 C -0.157 4.157 14 C -0.075 4.075 15 C -0.127 4.127 16 C -0.145 4.145 17 C -0.182 4.182 18 C 0.050 3.950 19 O -0.316 6.316 20 H 0.081 0.919 21 H 0.225 0.775 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.150 0.850 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.523 -3.775 6.156 7.241 hybrid contribution 0.272 1.967 0.215 1.997 sum 0.795 -1.808 6.372 6.671 Atomic orbital electron populations 1.69618 1.06580 1.28044 1.49319 1.25685 0.95943 1.02124 0.93198 0.85586 0.78490 0.78850 0.78502 1.19883 1.20418 1.20211 1.21813 0.93507 0.91469 1.52268 0.92283 1.18618 0.86033 0.93322 0.79719 1.86146 1.53210 1.53197 1.48235 1.22269 0.98986 0.96995 0.96041 1.20734 0.93926 1.00818 0.93638 1.21110 0.98804 1.00053 0.95722 1.21569 0.93998 0.93072 0.98814 1.21353 0.95613 0.98174 0.97557 1.21211 1.00676 0.98898 0.93711 1.21353 0.96208 0.99317 1.01299 1.18033 0.93536 0.94385 0.89074 1.84708 1.61971 1.35318 1.49557 0.91920 0.77476 0.92047 0.90650 0.89936 0.90232 0.84992 0.84193 0.83559 0.74221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.10 8.17 21.45 0.18 -45.93 15 2 C 0.03 1.65 5.25 84.65 0.44 2.09 15 3 Si 0.96 41.59 29.54 68.60 2.03 43.61 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 5 H -0.28 -11.72 7.11 99.48 0.71 -11.02 15 6 H -0.28 -11.90 7.11 99.48 0.71 -11.20 15 7 C -0.55 -29.53 8.23 25.60 0.21 -29.32 15 8 H 0.06 3.11 7.58 -2.91 -0.02 3.09 15 9 C 0.26 13.34 0.92 -11.61 -0.01 13.33 15 10 O -0.60 -32.25 13.03 -148.98 -1.94 -34.20 15 11 C -0.11 -4.59 6.31 31.51 0.20 -4.40 15 12 C -0.05 -2.10 6.70 30.52 0.20 -1.90 15 13 C -0.16 -6.72 6.11 -19.50 -0.12 -6.84 15 14 C -0.07 -3.57 4.83 -19.60 -0.09 -3.66 15 15 C -0.11 -5.01 8.84 22.31 0.20 -4.82 15 16 C -0.13 -4.85 10.04 22.22 0.22 -4.63 15 17 C -0.16 -5.77 9.98 22.34 0.22 -5.54 15 18 C 0.09 3.54 6.70 22.54 0.15 3.69 15 19 O -0.50 -15.62 13.45 -92.40 -1.24 -16.86 15 20 H 0.27 13.26 8.31 -92.71 -0.77 12.49 15 21 H 0.38 20.31 7.13 -74.06 -0.53 19.79 15 22 H 0.06 2.60 8.11 -2.38 -0.02 2.58 15 23 H 0.07 3.12 7.74 -2.38 -0.02 3.11 15 24 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 26 H 0.13 6.45 6.05 -2.91 -0.02 6.43 15 27 H 0.14 4.42 8.06 -2.91 -0.02 4.40 15 28 H 0.15 4.12 8.06 -2.91 -0.02 4.10 15 29 H 0.40 8.44 9.06 -74.06 -0.67 7.77 15 Total: -1.00 -59.82 245.80 0.63 -59.19 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.01 Total: 36.17 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 1.63 Total: -41.99 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.18 Total: -45.93 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -3.18 Total: -51.06 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -59.82 0.63 -59.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593476.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.261 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds