Wall clock time and date at job start Mon Mar 30 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99697 * 2 1 4 4 H 1.48493 * 109.46878 * 269.99635 * 3 2 1 5 5 H 1.48495 * 109.47198 * 29.99806 * 3 2 1 6 6 H 1.48502 * 109.46959 * 149.99669 * 3 2 1 7 7 C 1.37875 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99754 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00549 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47539 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.75958 * 54.55675 * 10 9 7 12 12 O 1.43272 * 109.61586 * 174.99770 * 10 9 7 13 13 C 1.43075 * 113.02402 * 185.21418 * 12 10 9 14 14 C 1.50786 * 109.30347 * 311.43035 * 13 12 10 15 15 C 1.38246 * 119.65165 * 195.72709 * 14 13 12 16 16 C 1.38215 * 120.10432 * 179.90220 * 15 14 13 17 17 C 1.38288 * 120.08765 * 0.42761 * 16 15 14 18 18 C 1.38090 * 120.03094 * 359.76983 * 17 16 15 19 19 C 1.38596 * 120.42496 * 16.00314 * 14 13 12 20 20 O 1.35966 * 120.54605 * 359.75359 * 19 14 13 21 21 H 0.96994 * 120.00257 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46932 * 60.00115 * 9 7 2 23 23 H 1.09001 * 109.47103 * 300.00827 * 9 7 2 24 24 H 1.09002 * 109.49750 * 191.48402 * 13 12 10 25 25 H 1.09001 * 109.49958 * 71.37809 * 13 12 10 26 26 H 1.07999 * 119.95125 * 0.08197 * 15 14 13 27 27 H 1.08004 * 119.95576 * 180.23072 * 16 15 14 28 28 H 1.08000 * 119.98413 * 179.74878 * 17 16 15 29 29 H 1.08001 * 120.00321 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5840 -3.1820 -0.8350 12 8 5.4496 -2.6417 -0.1161 13 6 5.9958 -3.9579 -0.2430 14 6 5.4060 -4.8472 0.8223 15 6 6.0070 -6.0578 1.1126 16 6 5.4754 -6.8794 2.0887 17 6 4.3356 -6.4966 2.7717 18 6 3.7291 -5.2901 2.4827 19 6 4.2641 -4.4607 1.5062 20 8 3.6623 -3.2730 1.2305 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8753 -0.6803 -0.8888 24 1 7.0784 -3.9156 -0.1233 25 1 5.7534 -4.3591 -1.2271 26 1 6.8950 -6.3609 0.5778 27 1 5.9491 -7.8230 2.3161 28 1 3.9193 -7.1417 3.5313 29 1 2.8386 -4.9918 3.0162 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:59 Heat of formation + Delta-G solvation = -64.208636 kcal Electronic energy + Delta-G solvation = -14551.571793 eV Core-core repulsion = 12018.745543 eV Total energy + Delta-G solvation = -2532.826250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.51332 -37.68487 -35.90393 -33.28026 -31.71272 -30.75244 -29.18113 -26.00868 -24.71813 -22.39600 -21.53276 -20.18612 -18.32750 -16.98665 -16.45228 -16.09874 -15.16299 -14.70826 -14.18130 -14.13353 -13.80078 -13.70747 -13.11287 -12.72009 -12.12126 -11.96629 -11.75186 -11.44764 -11.09967 -10.64998 -10.57909 -10.13814 -9.94259 -9.68218 -9.34112 -8.69625 -8.60838 -7.94389 -6.10101 -4.10279 1.37979 1.58452 3.28558 3.36618 3.41731 3.64207 3.87166 4.06055 4.40371 4.73807 4.89803 5.09292 5.23622 5.30451 5.38887 5.55665 5.58515 5.65406 5.82921 6.04870 6.12906 6.38301 6.56586 6.59861 6.81123 6.84641 7.09744 7.33258 7.59358 7.92597 8.42187 8.92576 9.48595 11.02603 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.047730 B = 0.007539 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.490455 B = 3713.284492 C = 4128.408179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.263 3.737 11 H 0.069 0.931 12 O -0.391 6.391 13 C 0.102 3.898 14 C -0.213 4.213 15 C -0.078 4.078 16 C -0.166 4.166 17 C -0.085 4.085 18 C -0.152 4.152 19 C 0.147 3.853 20 O -0.304 6.304 21 H 0.265 0.735 22 H 0.037 0.963 23 H 0.043 0.957 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.449 -11.080 1.817 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.095 0.905 9 C -0.035 4.035 10 C 0.170 3.830 11 H 0.086 0.914 12 O -0.311 6.311 13 C 0.025 3.975 14 C -0.214 4.214 15 C -0.096 4.096 16 C -0.184 4.184 17 C -0.103 4.103 18 C -0.170 4.170 19 C 0.101 3.899 20 O -0.219 6.219 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.123 0.877 25 H 0.083 0.917 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.244 -10.651 1.913 15.605 hybrid contribution 0.342 0.535 -0.120 0.646 sum 11.586 -10.116 1.793 15.485 Atomic orbital electron populations 1.69888 1.06219 1.27111 1.50273 1.24907 0.94772 0.99002 0.94269 0.86814 0.80557 0.83538 0.78710 1.20037 1.21078 1.18749 1.20806 0.87911 0.95132 1.51933 0.90450 1.19646 0.97808 0.87227 0.98827 1.24285 0.77829 0.97717 0.83150 0.91370 1.88308 1.23460 1.26314 1.93044 1.21421 0.98547 0.82180 0.95314 1.20431 0.98395 0.98873 1.03698 1.20671 0.99032 0.92796 0.97079 1.20926 0.98132 1.00521 0.98844 1.20939 0.95205 0.95366 0.98780 1.20642 1.02082 0.94128 1.00174 1.18846 0.90478 0.86159 0.94451 1.86510 1.62817 1.30338 1.42223 0.92475 0.94459 0.93856 0.87739 0.91691 0.85973 0.86154 0.85628 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.69 15 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 15 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 15 7 C -0.52 -14.91 9.46 -34.44 -0.33 -15.24 15 8 H 0.08 2.40 7.99 -52.48 -0.42 1.98 15 9 C 0.00 0.05 4.13 -27.89 -0.12 -0.06 15 10 C 0.26 5.79 3.29 37.15 0.12 5.91 15 11 H 0.07 1.46 8.12 -51.93 -0.42 1.04 15 12 O -0.39 -7.75 10.62 -59.11 -0.63 -8.37 15 13 C 0.10 1.56 6.87 36.05 0.25 1.81 15 14 C -0.21 -3.44 5.82 -104.44 -0.61 -4.05 15 15 C -0.08 -1.01 9.72 -39.59 -0.38 -1.39 15 16 C -0.17 -2.01 10.04 -39.57 -0.40 -2.41 15 17 C -0.08 -1.11 10.04 -39.62 -0.40 -1.50 15 18 C -0.15 -2.47 9.98 -39.41 -0.39 -2.87 15 19 C 0.15 2.78 6.56 -39.22 -0.26 2.53 15 20 O -0.30 -6.88 9.90 -43.52 -0.43 -7.31 15 21 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15 22 H 0.04 0.95 7.20 -51.93 -0.37 0.58 15 23 H 0.04 1.03 7.57 -51.93 -0.39 0.63 15 24 H 0.10 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 26 H 0.12 1.21 8.06 -52.49 -0.42 0.78 15 27 H 0.12 1.10 8.06 -52.48 -0.42 0.68 15 28 H 0.13 1.26 8.06 -52.49 -0.42 0.83 15 29 H 0.13 2.09 8.06 -52.49 -0.42 1.67 15 LS Contribution 251.77 15.07 3.79 3.79 Total: -1.00 -31.75 251.77 -7.08 -38.83 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.31 Total: -1.84 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -2.61 Total: -15.27 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.06 Total: -15.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.75 -7.08 -38.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds