Wall clock time and date at job start Mon Mar 30 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99697 * 2 1 4 4 H 1.48493 * 109.46878 * 269.99635 * 3 2 1 5 5 H 1.48495 * 109.47198 * 29.99806 * 3 2 1 6 6 H 1.48502 * 109.46959 * 149.99669 * 3 2 1 7 7 C 1.37875 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99754 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00549 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47539 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.75958 * 54.55675 * 10 9 7 12 12 O 1.43272 * 109.61586 * 174.99770 * 10 9 7 13 13 C 1.43075 * 113.02402 * 185.21418 * 12 10 9 14 14 C 1.50786 * 109.30347 * 311.43035 * 13 12 10 15 15 C 1.38246 * 119.65165 * 195.72709 * 14 13 12 16 16 C 1.38215 * 120.10432 * 179.90220 * 15 14 13 17 17 C 1.38288 * 120.08765 * 0.42761 * 16 15 14 18 18 C 1.38090 * 120.03094 * 359.76983 * 17 16 15 19 19 C 1.38596 * 120.42496 * 16.00314 * 14 13 12 20 20 O 1.35966 * 120.54605 * 359.75359 * 19 14 13 21 21 H 0.96994 * 120.00257 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46932 * 60.00115 * 9 7 2 23 23 H 1.09001 * 109.47103 * 300.00827 * 9 7 2 24 24 H 1.09002 * 109.49750 * 191.48402 * 13 12 10 25 25 H 1.09001 * 109.49958 * 71.37809 * 13 12 10 26 26 H 1.07999 * 119.95125 * 0.08197 * 15 14 13 27 27 H 1.08004 * 119.95576 * 180.23072 * 16 15 14 28 28 H 1.08000 * 119.98413 * 179.74878 * 17 16 15 29 29 H 1.08001 * 120.00321 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 1 3.5840 -3.1820 -0.8350 12 8 5.4496 -2.6417 -0.1161 13 6 5.9958 -3.9579 -0.2430 14 6 5.4060 -4.8472 0.8223 15 6 6.0070 -6.0578 1.1126 16 6 5.4754 -6.8794 2.0887 17 6 4.3356 -6.4966 2.7717 18 6 3.7291 -5.2901 2.4827 19 6 4.2641 -4.4607 1.5062 20 8 3.6623 -3.2730 1.2305 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8753 -0.6803 -0.8888 24 1 7.0784 -3.9156 -0.1233 25 1 5.7534 -4.3591 -1.2271 26 1 6.8950 -6.3609 0.5778 27 1 5.9491 -7.8230 2.3161 28 1 3.9193 -7.1417 3.5313 29 1 2.8386 -4.9918 3.0162 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:59 Heat of formation + Delta-G solvation = -85.036144 kcal Electronic energy + Delta-G solvation = -14552.474941 eV Core-core repulsion = 12018.745543 eV Total energy + Delta-G solvation = -2533.729399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.87234 -38.94687 -37.35787 -35.35973 -33.17050 -32.28309 -30.64061 -27.32358 -26.47623 -23.61225 -23.21174 -21.62141 -19.82751 -18.93462 -17.80531 -17.62058 -16.48195 -16.31819 -15.77941 -15.42921 -15.21113 -15.01845 -14.69353 -14.33585 -13.85332 -13.51237 -13.25497 -12.67072 -12.57587 -12.44731 -12.05485 -11.93895 -11.74240 -11.44326 -11.14372 -10.82925 -9.79851 -9.20380 -8.34310 -6.41115 0.27589 0.42724 1.35216 1.37830 1.50362 2.26100 2.33022 2.48076 2.80495 3.00998 3.61497 3.75050 3.81069 4.13635 4.26959 4.36063 4.36225 4.47532 4.61738 4.65440 4.89431 5.02449 5.10843 5.31624 5.37211 5.47630 5.53038 5.74904 5.93584 6.14851 6.48201 6.63827 7.21744 8.82132 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.047730 B = 0.007539 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.490455 B = 3713.284492 C = 4128.408179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.033 0.967 9 C 0.006 3.994 10 C 0.270 3.730 11 H 0.063 0.937 12 O -0.404 6.404 13 C 0.093 3.907 14 C -0.224 4.224 15 C -0.072 4.072 16 C -0.152 4.152 17 C -0.081 4.081 18 C -0.174 4.174 19 C 0.093 3.907 20 O -0.343 6.343 21 H 0.270 0.730 22 H 0.029 0.971 23 H 0.058 0.942 24 H 0.140 0.860 25 H 0.083 0.917 26 H 0.163 0.837 27 H 0.164 0.836 28 H 0.159 0.841 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.430 -12.277 1.833 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.774 3.226 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.052 0.948 9 C -0.031 4.031 10 C 0.177 3.823 11 H 0.081 0.919 12 O -0.324 6.324 13 C 0.017 3.983 14 C -0.225 4.225 15 C -0.090 4.090 16 C -0.169 4.169 17 C -0.098 4.098 18 C -0.193 4.193 19 C 0.048 3.952 20 O -0.260 6.260 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.158 0.842 25 H 0.101 0.899 26 H 0.180 0.820 27 H 0.181 0.819 28 H 0.176 0.824 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.245 -11.881 1.927 18.649 hybrid contribution -0.562 0.664 -0.067 0.872 sum 13.683 -11.217 1.859 17.790 Atomic orbital electron populations 1.70034 1.08194 1.28525 1.51571 1.25902 0.95688 1.03323 0.93576 0.85649 0.79275 0.77968 0.79756 1.18109 1.20455 1.17589 1.20980 0.90199 0.93710 1.51901 0.94835 1.19480 0.95086 0.89702 0.98865 1.23744 0.79252 0.95891 0.83376 0.91911 1.88230 1.21720 1.29286 1.93179 1.21862 1.00082 0.80172 0.96136 1.20677 0.97726 1.00399 1.03685 1.21152 0.99706 0.91184 0.96976 1.21490 0.96903 1.01514 0.97025 1.21351 0.95287 0.94018 0.99167 1.20838 1.02499 0.95596 1.00318 1.19346 0.92665 0.86004 0.97143 1.86419 1.64410 1.32712 1.42428 0.92062 0.95247 0.92388 0.84207 0.89867 0.81973 0.81894 0.82387 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.83 13.96 21.45 0.30 -59.53 15 2 C 0.01 0.77 5.47 84.65 0.46 1.23 15 3 Si 0.95 44.77 27.47 68.60 1.88 46.66 15 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 15 7 C -0.53 -31.87 9.46 25.60 0.24 -31.63 15 8 H 0.03 2.23 7.99 -2.91 -0.02 2.21 15 9 C 0.01 0.30 4.13 29.84 0.12 0.43 15 10 C 0.27 12.34 3.29 71.98 0.24 12.58 15 11 H 0.06 2.84 8.12 -2.39 -0.02 2.82 15 12 O -0.40 -15.83 10.62 -126.14 -1.34 -17.17 15 13 C 0.09 2.65 6.87 71.26 0.49 3.14 15 14 C -0.22 -6.89 5.82 -19.75 -0.11 -7.01 15 15 C -0.07 -1.58 9.72 22.27 0.22 -1.37 15 16 C -0.15 -2.98 10.04 22.28 0.22 -2.76 15 17 C -0.08 -1.90 10.04 22.25 0.22 -1.67 15 18 C -0.17 -5.77 9.98 22.38 0.22 -5.55 15 19 C 0.09 3.61 6.56 22.50 0.15 3.76 15 20 O -0.34 -16.45 9.90 -70.33 -0.70 -17.14 15 21 H 0.27 15.84 8.31 -92.71 -0.77 15.07 15 22 H 0.03 1.52 7.20 -2.39 -0.02 1.50 15 23 H 0.06 2.74 7.57 -2.39 -0.02 2.72 15 24 H 0.14 2.94 8.14 -2.39 -0.02 2.92 15 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 15 26 H 0.16 2.23 8.06 -2.91 -0.02 2.20 15 27 H 0.16 1.90 8.06 -2.91 -0.02 1.87 15 28 H 0.16 2.61 8.06 -2.91 -0.02 2.59 15 29 H 0.12 4.09 8.06 -2.91 -0.02 4.07 15 Total: -1.00 -73.09 251.77 3.71 -69.38 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.08 Total: 6.65 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 2.47 Total: -28.85 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.30 Total: -59.53 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -2.04 Total: -34.31 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -73.09 3.71 -69.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.653 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds