Wall clock time and date at job start Mon Mar 30 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36644 * 125.87348 * 2 1 4 4 N 1.29712 * 109.22246 * 180.02562 * 3 2 1 5 5 N 1.40047 * 108.31839 * 0.02562 * 4 3 2 6 6 C 1.35801 * 107.34741 * 359.97438 * 5 4 3 7 7 N 1.32222 * 121.28297 * 180.02562 * 6 5 4 8 8 C 1.33647 * 121.59486 * 359.97438 * 7 6 5 9 9 O 1.22342 * 120.06629 * 179.97438 * 8 7 6 10 10 C 1.41347 * 119.86392 * 359.78993 * 8 7 6 11 11 C 1.38250 * 132.36124 * 180.02562 * 5 4 3 12 12 C 1.40301 * 120.71239 * 359.95219 * 11 5 4 13 13 H 1.07996 * 120.00074 * 335.32869 * 12 11 5 14 14 C 1.40473 * 119.99794 * 155.60720 * 12 11 5 15 15 N 1.30516 * 120.00399 * 342.07943 * 14 12 11 16 16 Si 1.86806 * 119.99835 * 162.07897 * 14 12 11 17 17 H 1.48506 * 109.46816 * 94.56175 * 16 14 12 18 18 H 1.48492 * 109.47340 * 214.56442 * 16 14 12 19 19 H 1.48504 * 109.47094 * 334.56743 * 16 14 12 20 20 H 1.09004 * 109.47277 * 89.97046 * 1 2 3 21 21 H 1.09005 * 109.47545 * 209.97148 * 1 2 3 22 22 H 1.09004 * 109.47017 * 329.97434 * 1 2 3 23 23 H 1.08005 * 125.38592 * 0.06288 * 3 2 1 24 24 H 1.07997 * 120.81105 * 180.23685 * 10 8 7 25 25 H 0.97002 * 119.99814 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2657 1.1072 0.0000 4 7 3.5085 0.7356 -0.0005 5 7 3.5492 -0.6643 -0.0015 6 6 2.2653 -1.1068 -0.0009 7 7 1.9843 -2.3988 -0.0011 8 6 2.9479 -3.3249 -0.0024 9 8 2.6562 -4.5130 -0.0020 10 6 4.3048 -2.9288 -0.0081 11 6 4.5974 -1.5657 -0.0019 12 6 5.9272 -1.1184 -0.0023 13 1 6.1679 -0.1406 -0.3927 14 6 6.9463 -1.9446 0.4997 15 7 6.6476 -2.9535 1.2719 16 14 8.7292 -1.5993 0.0620 17 1 9.3492 -0.7717 1.1278 18 1 9.4664 -2.8826 -0.0601 19 1 8.7893 -0.8690 -1.2297 20 1 -0.3634 0.0005 -1.0277 21 1 -0.3634 -0.8903 0.5134 22 1 -0.3633 0.8898 0.5143 23 1 1.9187 2.1300 0.0010 24 1 5.0957 -3.6642 -0.0130 25 1 7.3513 -3.5242 1.6183 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635416.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:34 Heat of formation + Delta-G solvation = 86.134041 kcal Electronic energy + Delta-G solvation = -14528.135852 eV Core-core repulsion = 11930.581357 eV Total energy + Delta-G solvation = -2597.554495 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.05849 -37.91121 -35.60747 -34.07600 -33.87927 -30.88563 -29.02406 -27.00261 -26.31930 -23.20580 -21.81420 -21.27405 -17.93467 -17.38028 -16.85279 -16.17864 -15.41003 -15.35436 -14.63710 -13.66204 -13.62201 -12.89031 -12.73092 -12.66404 -12.16631 -11.84144 -11.43274 -11.31487 -10.95693 -10.64675 -10.44694 -10.34007 -9.51725 -9.42485 -8.07741 -7.64435 -7.05103 -7.00218 -4.88522 2.07391 2.19702 2.43395 2.75303 2.94340 3.00617 3.19546 3.30309 3.72144 4.57733 4.75798 4.88253 4.94335 5.28400 5.50444 5.60720 5.80340 6.24322 6.67159 6.86400 6.97538 7.14130 7.36484 7.72861 7.99156 8.16078 8.40260 8.62847 9.32286 9.84794 9.89729 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.010796 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.149606 B = 2592.813745 C = 3331.176854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.525 5.525 3 C 0.248 3.752 4 N -0.277 5.277 5 N -0.364 5.364 6 C 0.541 3.459 7 N -0.627 5.627 8 C 0.519 3.481 9 O -0.593 6.593 10 C -0.393 4.393 11 C 0.323 3.677 12 C -0.441 4.441 13 H 0.094 0.906 14 C 0.078 3.922 15 N -0.748 5.748 16 Si 0.928 3.072 17 H -0.266 1.266 18 H -0.269 1.269 19 H -0.256 1.256 20 H 0.071 0.929 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.235 0.765 24 H 0.150 0.850 25 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 11.918 -1.188 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.236 5.236 3 C -0.050 4.050 4 N -0.095 5.095 5 N -0.155 5.155 6 C 0.184 3.816 7 N -0.386 5.386 8 C 0.322 3.678 9 O -0.481 6.481 10 C -0.422 4.422 11 C 0.224 3.776 12 C -0.472 4.472 13 H 0.112 0.888 14 C -0.147 4.147 15 N -0.370 5.370 16 Si 0.751 3.249 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.179 1.179 20 H 0.089 0.911 21 H 0.111 0.889 22 H 0.104 0.896 23 H 0.251 0.749 24 H 0.167 0.833 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.078 10.969 -1.038 11.748 hybrid contribution 0.718 0.353 -0.075 0.804 sum -3.359 11.322 -1.113 11.862 Atomic orbital electron populations 1.21851 0.74056 1.04697 1.03385 1.44376 1.08050 1.03053 1.68168 1.26057 0.85738 0.94278 0.98930 1.77044 1.17309 0.92236 1.22918 1.47017 1.06617 1.02264 1.59646 1.20062 0.80316 0.88535 0.92658 1.68353 1.39949 0.94415 1.35866 1.17106 0.85708 0.86894 0.78101 1.90707 1.85677 1.16202 1.55546 1.22779 0.97818 0.92420 1.29169 1.18046 0.84324 0.84889 0.90297 1.19305 0.88917 1.03565 1.35404 0.88772 1.25999 1.02620 0.93696 0.92409 1.69744 1.36944 1.11615 1.18719 0.85970 0.79330 0.79290 0.80351 1.19085 1.19400 1.17937 0.91074 0.88903 0.89645 0.74880 0.83270 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 11.14 59.85 0.67 1.71 15 2 N -0.52 -8.25 3.17 -126.84 -0.40 -8.65 15 3 C 0.25 3.32 12.61 -89.54 -1.13 2.19 15 4 N -0.28 -5.34 12.47 29.78 0.37 -4.97 15 5 N -0.36 -8.76 3.92 -11.33 -0.04 -8.80 15 6 C 0.54 12.36 8.54 -321.36 -2.75 9.62 15 7 N -0.63 -16.89 10.46 -15.77 -0.17 -17.06 15 8 C 0.52 15.89 7.70 -15.58 -0.12 15.77 15 9 O -0.59 -19.80 17.98 4.60 0.08 -19.72 15 10 C -0.39 -11.64 8.76 -37.96 -0.33 -11.97 15 11 C 0.32 8.80 6.49 -83.76 -0.54 8.26 15 12 C -0.44 -11.36 9.15 -37.96 -0.35 -11.71 15 13 H 0.09 2.31 7.91 -52.49 -0.42 1.89 15 14 C 0.08 1.89 5.15 -17.27 -0.09 1.80 15 15 N -0.75 -19.25 11.00 55.57 0.61 -18.64 15 16 Si 0.93 17.74 29.60 -169.99 -5.03 12.71 15 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 19 H -0.26 -4.83 7.11 56.52 0.40 -4.42 15 20 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.09 1.10 8.14 -51.93 -0.42 0.67 15 22 H 0.08 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.24 1.43 8.06 -52.48 -0.42 1.01 15 24 H 0.15 4.60 6.24 -52.49 -0.33 4.27 15 25 H 0.29 6.70 8.29 -40.82 -0.34 6.36 15 LS Contribution 234.39 15.07 3.53 3.53 Total: -1.00 -37.80 234.39 -7.25 -45.05 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -1.57 Total: 0.87 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: -4.64 Total: 15.67 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.37 Total: -58.12 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.08 Total: -19.72 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -37.80 -7.25 -45.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635416.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.185 kcal (2) G-P(sol) polarization free energy of solvation -37.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds