Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99755 * 2 1 4 4 H 1.48504 * 109.47381 * 269.99497 * 3 2 1 5 5 H 1.48503 * 109.47208 * 29.99846 * 3 2 1 6 6 H 1.48507 * 109.47047 * 149.99887 * 3 2 1 7 7 C 1.37874 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.35027 * 125.67585 * 124.99939 * 10 9 7 12 12 N 1.37013 * 107.16566 * 180.02562 * 11 10 9 13 13 C 1.37097 * 106.98596 * 359.97438 * 12 11 10 14 14 C 1.40885 * 119.65799 * 179.97438 * 13 12 11 15 15 C 1.36098 * 119.38175 * 0.02562 * 14 13 12 16 16 C 1.40303 * 119.71113 * 0.02562 * 15 14 13 17 17 C 1.35372 * 120.26555 * 359.96179 * 16 15 14 18 18 F 1.35102 * 119.72275 * 180.02562 * 17 16 15 19 19 N 1.32578 * 108.01938 * 0.02562 * 13 12 11 20 20 H 0.97003 * 120.00178 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47430 * 59.99794 * 9 7 2 22 22 H 1.09001 * 109.46661 * 299.99500 * 9 7 2 23 23 H 1.07992 * 126.41816 * 0.02562 * 11 10 9 24 24 H 1.08001 * 120.30771 * 179.72239 * 14 13 12 25 25 H 1.08001 * 120.14829 * 179.97438 * 15 14 13 26 26 H 1.08006 * 119.86810 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.2640 -4.6519 0.8990 12 7 3.2983 -5.4770 0.5431 13 6 3.8720 -4.9385 -0.5797 14 6 4.9739 -5.5822 -1.1767 15 6 5.4530 -6.7320 -0.6284 16 6 4.8452 -7.2605 0.5204 17 6 3.7872 -6.6312 1.0835 18 9 3.2106 -7.1495 2.1899 19 7 3.2099 -3.8321 -0.8882 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6242 -2.5566 0.8904 23 1 1.6000 -4.7828 1.7406 24 1 5.4310 -5.1696 -2.0639 25 1 6.2969 -7.2359 -1.0760 26 1 5.2231 -8.1731 0.9574 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260685808.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = 23.443892 kcal Electronic energy + Delta-G solvation = -13915.661040 eV Core-core repulsion = 11295.468135 eV Total energy + Delta-G solvation = -2620.192905 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.40415 -43.69132 -38.37323 -35.38126 -34.46201 -32.34745 -30.11375 -29.06266 -25.69429 -23.97446 -23.86237 -21.46834 -19.46513 -18.68322 -18.24454 -17.77250 -17.23527 -16.56832 -16.25075 -15.96057 -15.43655 -14.91594 -14.40186 -14.08329 -13.77119 -13.20056 -13.04838 -12.79196 -12.64001 -12.30820 -12.03912 -11.91008 -11.53661 -11.02683 -10.61017 -9.64753 -8.82813 -8.21285 -6.31182 -0.36043 0.24104 1.22810 1.38530 1.41254 1.52159 1.82407 2.40953 2.51852 2.93623 3.10353 3.30321 3.47843 3.84543 4.11599 4.38414 4.50167 4.60439 4.90622 4.97025 5.14904 5.23450 5.38396 5.53748 5.63662 5.71555 5.98015 6.18372 6.76426 6.96986 7.35544 8.89966 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.047788 B = 0.006853 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.782739 B = 4085.105603 C = 4401.768330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.047 0.953 9 C 0.095 3.905 10 C 0.084 3.916 11 C -0.126 4.126 12 N -0.397 5.397 13 C 0.222 3.778 14 C -0.104 4.104 15 C -0.057 4.057 16 C -0.142 4.142 17 C 0.232 3.768 18 F -0.116 7.116 19 N -0.525 5.525 20 H 0.267 0.733 21 H 0.010 0.990 22 H 0.025 0.975 23 H 0.194 0.806 24 H 0.173 0.827 25 H 0.206 0.794 26 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 -16.586 1.109 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.057 3.943 10 C -0.046 4.046 11 C -0.254 4.254 12 N -0.076 5.076 13 C -0.021 4.021 14 C -0.124 4.124 15 C -0.080 4.080 16 C -0.164 4.164 17 C 0.112 3.888 18 F -0.095 7.095 19 N -0.246 5.246 20 H 0.076 0.924 21 H 0.028 0.972 22 H 0.044 0.956 23 H 0.211 0.789 24 H 0.190 0.810 25 H 0.223 0.777 26 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 11.927 -15.958 0.569 19.930 hybrid contribution -0.742 0.640 1.046 1.433 sum 11.185 -15.318 1.614 19.035 Atomic orbital electron populations 1.70060 1.07450 1.28028 1.51444 1.25884 0.95862 1.02975 0.94580 0.85394 0.78433 0.78326 0.78532 1.19767 1.19905 1.19473 1.21224 0.92819 0.91204 1.50754 0.93501 1.17515 0.91352 0.89012 0.96447 1.21488 0.95764 0.95879 0.91515 1.22602 0.98987 0.96109 1.07735 1.43461 1.23910 1.17602 1.22653 1.21931 0.99449 0.92930 0.87752 1.20781 0.92795 0.96568 1.02263 1.21441 1.00024 0.93281 0.93222 1.21251 0.93477 1.03163 0.98534 1.18003 0.96398 0.87267 0.87130 1.91615 1.84394 1.84081 1.49384 1.70663 1.09824 1.15187 1.28928 0.92432 0.97210 0.95639 0.78928 0.80960 0.77714 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.30 15 2 C 0.00 0.29 5.46 84.65 0.46 0.75 15 3 Si 0.97 46.54 29.54 68.60 2.03 48.57 15 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 15 5 H -0.27 -12.50 7.11 99.48 0.71 -11.80 15 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 15 7 C -0.52 -32.10 9.07 25.60 0.23 -31.86 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 9 C 0.09 5.47 5.53 29.10 0.16 5.63 15 10 C 0.08 4.26 6.27 41.56 0.26 4.52 15 11 C -0.13 -5.35 11.58 83.14 0.96 -4.39 15 12 N -0.40 -14.36 2.95 -353.32 -1.04 -15.40 15 13 C 0.22 8.41 7.81 134.08 1.05 9.45 15 14 C -0.10 -2.53 10.10 22.42 0.23 -2.31 15 15 C -0.06 -0.82 10.06 22.27 0.22 -0.59 15 16 C -0.14 -2.29 9.95 22.11 0.22 -2.07 15 17 C 0.23 6.14 8.24 83.30 0.69 6.83 15 18 F -0.12 -2.99 17.20 44.97 0.77 -2.22 15 19 N -0.52 -25.61 11.29 -182.43 -2.06 -27.67 15 20 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 21 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 22 H 0.03 1.48 8.10 -2.39 -0.02 1.46 15 23 H 0.19 7.20 8.06 -2.91 -0.02 7.17 15 24 H 0.17 3.47 8.06 -2.91 -0.02 3.44 15 25 H 0.21 0.75 8.06 -2.91 -0.02 0.72 15 26 H 0.21 1.37 8.06 -2.91 -0.02 1.34 15 Total: -1.00 -77.21 244.18 5.66 -71.55 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: 1.20 Total: -3.50 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 4.48 Total: -14.03 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -2.82 Total: -100.37 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.77 Total: -2.22 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -77.21 5.66 -71.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260685808.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.998 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds