Wall clock time and date at job start Mon Mar 30 2020 02:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38074 * 119.91927 * 2 1 4 4 C 1.38273 * 119.29419 * 180.02562 * 3 2 1 5 5 C 1.37749 * 120.54447 * 359.88296 * 4 3 2 6 6 C 1.39716 * 121.00413 * 359.97438 * 5 4 3 7 7 C 1.38749 * 117.81040 * 0.24239 * 6 5 4 8 8 S 1.77436 * 108.23562 * 179.64199 * 7 6 5 9 9 C 1.83296 * 96.60015 * 344.54745 * 8 7 6 10 10 C 1.50869 * 126.70578 * 180.20805 * 6 5 4 11 11 H 1.09002 * 109.27204 * 320.50784 * 10 6 5 12 12 C 1.50706 * 109.26996 * 80.00321 * 10 6 5 13 13 H 1.07997 * 119.99562 * 1.20164 * 12 10 6 14 14 C 1.37877 * 120.00159 * 181.19706 * 12 10 6 15 15 N 1.31510 * 119.99756 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00022 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47308 * 89.99543 * 16 14 12 18 18 H 1.48501 * 109.46878 * 209.99986 * 16 14 12 19 19 H 1.48507 * 109.46947 * 329.99669 * 16 14 12 20 20 H 1.09003 * 109.47267 * 269.97836 * 1 2 3 21 21 H 1.09009 * 109.47432 * 29.97835 * 1 2 3 22 22 H 1.09000 * 109.47156 * 149.97528 * 1 2 3 23 23 H 1.08006 * 120.35159 * 0.04550 * 3 2 1 24 24 H 1.08001 * 119.73118 * 179.89515 * 4 3 2 25 25 H 1.07997 * 119.47237 * 180.02562 * 5 4 3 26 26 H 1.09004 * 111.09238 * 266.92872 * 9 8 7 27 27 H 1.09000 * 111.09848 * 142.84747 * 9 8 7 28 28 H 0.96998 * 119.99911 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1967 0.0000 4 6 3.5783 1.1816 -0.0005 5 6 4.2654 -0.0123 0.0014 6 6 3.5864 -1.2333 0.0044 7 6 2.1992 -1.2027 0.0002 8 16 1.6069 -2.8753 -0.0052 9 6 3.1924 -3.6587 -0.4872 10 6 4.2052 -2.6092 0.0111 11 1 5.0785 -2.6141 -0.6412 12 6 4.6311 -2.9562 1.4145 13 1 4.4521 -2.2602 2.2207 14 6 5.2492 -4.1621 1.6691 15 7 5.4675 -5.0093 0.6873 16 14 5.7765 -4.5924 3.4087 17 1 4.6682 -5.2969 4.1019 18 1 6.9702 -5.4744 3.3602 19 1 6.1102 -3.3477 4.1470 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6600 2.1346 0.0007 24 1 4.1241 2.1136 -0.0023 25 1 5.3453 -0.0038 0.0013 26 1 3.2558 -3.7829 -1.5682 27 1 3.3307 -4.6113 0.0241 28 1 5.9020 -5.8578 0.8665 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260723722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:29 Heat of formation + Delta-G solvation = 11.790202 kcal Electronic energy + Delta-G solvation = -12536.686849 eV Core-core repulsion = 10449.909026 eV Total energy + Delta-G solvation = -2086.777822 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.80308 -34.90839 -32.19092 -31.51946 -28.43064 -26.52716 -25.32294 -22.68452 -21.27231 -19.63081 -16.68195 -16.46468 -14.98922 -14.85595 -14.34912 -13.77698 -13.64246 -13.11155 -12.51866 -12.37092 -11.87869 -11.73547 -11.51097 -11.21251 -11.01682 -10.94116 -10.59163 -10.39267 -9.76525 -9.47393 -9.26201 -8.93416 -8.44654 -7.90333 -6.54762 -6.15444 -4.25557 1.90271 1.97117 2.63357 3.24434 3.31259 3.34331 3.35473 4.24138 4.39888 5.10802 5.31103 5.40958 5.53162 5.69234 5.93435 5.99699 6.08169 6.21301 6.34071 6.35528 6.50777 6.70038 6.96278 6.98744 7.10583 7.23994 7.43761 7.60608 7.76942 8.10655 8.76680 9.39845 10.87741 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.035024 B = 0.010245 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.262539 B = 2732.252032 C = 3059.629567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.126 4.126 5 C -0.109 4.109 6 C -0.051 4.051 7 C -0.079 4.079 8 S -0.199 6.199 9 C -0.044 4.044 10 C 0.068 3.932 11 H 0.053 0.947 12 C -0.499 4.499 13 H 0.061 0.939 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 7.451 -2.101 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.150 4.150 4 C -0.147 4.147 5 C -0.129 4.129 6 C -0.056 4.056 7 C -0.192 4.192 8 S 0.043 5.957 9 C -0.192 4.192 10 C 0.049 3.951 11 H 0.071 0.929 12 C -0.537 4.537 13 H 0.079 0.921 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.197 1.197 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.136 0.864 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.146 6.588 -1.903 9.209 hybrid contribution 1.582 0.259 0.730 1.761 sum -4.565 6.847 -1.173 8.312 Atomic orbital electron populations 1.20722 0.91640 1.02254 1.01918 1.19083 0.95365 0.90973 1.01966 1.20705 0.94130 0.96293 1.03878 1.20790 0.94210 0.97345 1.02330 1.20848 0.99759 0.91038 1.01242 1.21567 0.92293 0.96922 0.94832 1.21918 0.96042 0.95708 1.05527 1.85329 1.22994 0.99544 1.87794 1.24565 0.89412 1.04109 1.01141 1.18289 0.94084 0.83938 0.98788 0.92930 1.20924 1.38062 1.02697 0.92039 0.92061 1.24964 0.95290 0.96088 0.97584 1.69893 1.42441 1.09317 1.31315 0.86452 0.78193 0.78499 0.84173 1.20364 1.21072 1.19730 0.91639 0.92050 0.91460 0.86404 0.86724 0.86511 0.91952 0.85375 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.88 36.00 0.36 -1.26 15 2 C -0.07 -1.23 5.89 -104.49 -0.62 -1.85 15 3 C -0.13 -2.13 9.73 -39.63 -0.39 -2.52 15 4 C -0.13 -2.12 10.00 -39.75 -0.40 -2.52 15 5 C -0.11 -2.15 9.98 -39.21 -0.39 -2.54 15 6 C -0.05 -1.15 5.15 -103.80 -0.53 -1.69 15 7 C -0.08 -1.70 6.28 -39.20 -0.25 -1.95 15 8 S -0.20 -4.35 22.37 -107.50 -2.41 -6.75 15 9 C -0.04 -1.04 6.62 37.75 0.25 -0.79 15 10 C 0.07 1.69 2.50 -92.25 -0.23 1.46 15 11 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 12 C -0.50 -13.43 8.49 -34.44 -0.29 -13.72 15 13 H 0.06 1.70 7.73 -52.49 -0.41 1.29 15 14 C 0.06 1.67 5.07 -17.82 -0.09 1.58 15 15 N -0.89 -24.23 11.66 55.43 0.65 -23.59 15 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 20 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 21 H 0.06 0.75 8.08 -51.92 -0.42 0.33 15 22 H 0.07 1.03 7.60 -51.93 -0.39 0.64 15 23 H 0.12 1.54 8.06 -52.48 -0.42 1.11 15 24 H 0.11 1.55 8.06 -52.49 -0.42 1.13 15 25 H 0.12 2.18 8.06 -52.49 -0.42 1.75 15 26 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 27 H 0.13 3.29 6.22 -51.93 -0.32 2.97 15 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 LS Contribution 251.03 15.07 3.78 3.78 Total: -1.00 -27.60 251.03 -8.79 -36.38 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.21 Total: 0.03 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -2.58 Total: -25.78 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.65 Total: -23.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -2.41 Total: -6.75 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.60 -8.79 -36.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.175 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds