Wall clock time and date at job start Mon Mar 30 2020 02:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38074 * 119.91927 * 2 1 4 4 C 1.38273 * 119.29419 * 180.02562 * 3 2 1 5 5 C 1.37749 * 120.54447 * 359.88296 * 4 3 2 6 6 C 1.39716 * 121.00413 * 359.97438 * 5 4 3 7 7 C 1.38749 * 117.81040 * 0.24239 * 6 5 4 8 8 S 1.77436 * 108.23562 * 179.64199 * 7 6 5 9 9 C 1.83296 * 96.60015 * 344.54745 * 8 7 6 10 10 C 1.50869 * 126.70578 * 180.20805 * 6 5 4 11 11 H 1.09002 * 109.27204 * 320.50784 * 10 6 5 12 12 C 1.50706 * 109.26996 * 80.00321 * 10 6 5 13 13 H 1.07997 * 119.99562 * 1.20164 * 12 10 6 14 14 C 1.37877 * 120.00159 * 181.19706 * 12 10 6 15 15 N 1.31510 * 119.99756 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00022 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47308 * 89.99543 * 16 14 12 18 18 H 1.48501 * 109.46878 * 209.99986 * 16 14 12 19 19 H 1.48507 * 109.46947 * 329.99669 * 16 14 12 20 20 H 1.09003 * 109.47267 * 269.97836 * 1 2 3 21 21 H 1.09009 * 109.47432 * 29.97835 * 1 2 3 22 22 H 1.09000 * 109.47156 * 149.97528 * 1 2 3 23 23 H 1.08006 * 120.35159 * 0.04550 * 3 2 1 24 24 H 1.08001 * 119.73118 * 179.89515 * 4 3 2 25 25 H 1.07997 * 119.47237 * 180.02562 * 5 4 3 26 26 H 1.09004 * 111.09238 * 266.92872 * 9 8 7 27 27 H 1.09000 * 111.09848 * 142.84747 * 9 8 7 28 28 H 0.96998 * 119.99911 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1967 0.0000 4 6 3.5783 1.1816 -0.0005 5 6 4.2654 -0.0123 0.0014 6 6 3.5864 -1.2333 0.0044 7 6 2.1992 -1.2027 0.0002 8 16 1.6069 -2.8753 -0.0052 9 6 3.1924 -3.6587 -0.4872 10 6 4.2052 -2.6092 0.0111 11 1 5.0785 -2.6141 -0.6412 12 6 4.6311 -2.9562 1.4145 13 1 4.4521 -2.2602 2.2207 14 6 5.2492 -4.1621 1.6691 15 7 5.4675 -5.0093 0.6873 16 14 5.7765 -4.5924 3.4087 17 1 4.6682 -5.2969 4.1019 18 1 6.9702 -5.4744 3.3602 19 1 6.1102 -3.3477 4.1470 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6600 2.1346 0.0007 24 1 4.1241 2.1136 -0.0023 25 1 5.3453 -0.0038 0.0013 26 1 3.2558 -3.7829 -1.5682 27 1 3.3307 -4.6113 0.0241 28 1 5.9020 -5.8578 0.8665 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260723722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:29 Heat of formation + Delta-G solvation = -1.875790 kcal Electronic energy + Delta-G solvation = -12537.279450 eV Core-core repulsion = 10449.909026 eV Total energy + Delta-G solvation = -2087.370424 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.29613 -36.70127 -33.89534 -33.07690 -30.10944 -27.96892 -27.20993 -24.38417 -22.74782 -21.28593 -18.51414 -18.22501 -16.77067 -16.47211 -15.80750 -15.39271 -15.33210 -14.55950 -14.14451 -13.88652 -13.66944 -13.21880 -12.99402 -12.84847 -12.75331 -12.67509 -12.33455 -12.01568 -11.52578 -11.43742 -11.00787 -10.67122 -10.30042 -9.39106 -8.33998 -8.08731 -6.37060 0.42789 0.50283 0.96211 1.38124 1.39890 1.49657 1.57341 2.36723 2.85727 3.04971 3.95373 4.03835 4.12942 4.43618 4.45480 4.50807 4.63688 4.79152 4.82971 4.88935 5.05000 5.19900 5.30413 5.35029 5.55941 5.63678 5.69259 5.77932 6.06950 6.18333 6.66969 7.31098 8.82702 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.035024 B = 0.010245 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.262539 B = 2732.252032 C = 3059.629567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.072 4.072 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.103 4.103 8 S -0.196 6.196 9 C -0.044 4.044 10 C 0.069 3.931 11 H 0.023 0.977 12 C -0.515 4.515 13 H 0.046 0.954 14 C 0.021 3.979 15 N -0.913 5.913 16 Si 0.958 3.042 17 H -0.275 1.275 18 H -0.277 1.277 19 H -0.271 1.271 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.056 0.944 23 H 0.165 0.835 24 H 0.156 0.844 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 9.909 -1.560 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.147 4.147 6 C -0.093 4.093 7 C -0.216 4.216 8 S 0.046 5.954 9 C -0.192 4.192 10 C 0.050 3.950 11 H 0.041 0.959 12 C -0.553 4.553 13 H 0.065 0.935 14 C -0.179 4.179 15 N -0.552 5.552 16 Si 0.783 3.217 17 H -0.201 1.201 18 H -0.202 1.202 19 H -0.195 1.195 20 H 0.093 0.907 21 H 0.115 0.885 22 H 0.075 0.925 23 H 0.183 0.817 24 H 0.173 0.827 25 H 0.134 0.866 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.190 9.059 -1.368 11.646 hybrid contribution 1.881 -0.375 0.531 1.991 sum -5.308 8.684 -0.837 10.212 Atomic orbital electron populations 1.20787 0.89174 1.03527 1.02836 1.19625 0.97328 0.90363 1.00484 1.21274 0.94041 0.97301 1.01042 1.21249 0.94902 0.97517 0.99679 1.21056 1.00117 0.91433 1.02047 1.21439 0.93278 0.96552 0.98013 1.22105 0.95718 0.96034 1.07714 1.85091 1.21143 1.00837 1.88337 1.24278 0.90959 1.02902 1.01087 1.18158 0.93550 0.86194 0.97128 0.95945 1.21065 1.38668 1.02779 0.92774 0.93539 1.25667 0.95249 0.95918 1.01045 1.69991 1.42729 1.09534 1.32904 0.85551 0.77985 0.78232 0.79962 1.20080 1.20207 1.19522 0.90744 0.88542 0.92486 0.81704 0.82673 0.86587 0.91386 0.87902 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 9.88 71.23 0.70 -2.08 15 2 C -0.07 -2.41 5.89 -19.78 -0.12 -2.53 15 3 C -0.12 -3.27 9.73 22.24 0.22 -3.06 15 4 C -0.11 -3.39 10.00 22.16 0.22 -3.17 15 5 C -0.13 -4.91 9.98 22.51 0.22 -4.68 15 6 C -0.09 -4.02 5.15 -19.33 -0.10 -4.12 15 7 C -0.10 -4.38 6.28 22.52 0.14 -4.23 15 8 S -0.20 -8.68 22.37 -56.49 -1.26 -9.94 15 9 C -0.04 -2.17 6.62 72.36 0.48 -1.69 15 10 C 0.07 3.58 2.50 -11.85 -0.03 3.55 15 11 H 0.02 1.26 8.14 -2.39 -0.02 1.24 15 12 C -0.52 -28.70 8.49 25.60 0.22 -28.48 15 13 H 0.05 2.66 7.73 -2.91 -0.02 2.64 15 14 C 0.02 1.14 5.07 84.66 0.43 1.57 15 15 N -0.91 -51.21 11.66 21.45 0.25 -50.96 15 16 Si 0.96 43.54 29.54 68.60 2.03 45.57 15 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 20 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 21 H 0.10 1.85 8.08 -2.38 -0.02 1.83 15 22 H 0.06 1.61 7.60 -2.39 -0.02 1.59 15 23 H 0.17 3.11 8.06 -2.91 -0.02 3.09 15 24 H 0.16 3.37 8.06 -2.91 -0.02 3.35 15 25 H 0.12 4.36 8.06 -2.91 -0.02 4.34 15 26 H 0.07 3.16 8.14 -2.39 -0.02 3.14 15 27 H 0.10 5.57 6.22 -2.39 -0.01 5.55 15 28 H 0.27 14.20 8.31 -92.71 -0.77 13.43 15 Total: -1.00 -61.26 251.03 4.55 -56.71 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.15 Total: 7.54 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 2.39 Total: -48.92 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.25 Total: -50.96 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.26 Total: -9.94 kcal Total: -61.26 4.55 -56.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.838 kcal (2) G-P(sol) polarization free energy of solvation -61.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds