Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 111.00095 * 2 1 4 4 S 1.83297 * 111.10480 * 124.16121 * 2 1 3 5 5 C 1.77434 * 96.61256 * 142.78965 * 4 2 1 6 6 C 1.38822 * 130.56954 * 164.76976 * 5 4 2 7 7 C 1.38023 * 120.16242 * 180.24235 * 6 5 4 8 8 C 1.38320 * 119.29223 * 0.02816 * 7 6 5 9 9 C 1.37708 * 120.54397 * 359.87600 * 8 7 6 10 10 C 1.38888 * 108.28237 * 344.80226 * 5 4 2 11 11 C 1.50871 * 115.36873 * 359.27072 * 10 5 4 12 12 H 1.09000 * 109.27647 * 140.89233 * 11 10 5 13 13 C 1.50697 * 109.28062 * 260.32898 * 11 10 5 14 14 H 1.08010 * 119.99606 * 57.69503 * 13 11 10 15 15 C 1.37874 * 120.00662 * 237.69354 * 13 11 10 16 16 N 1.31513 * 120.00326 * 173.76051 * 15 13 11 17 17 Si 1.86798 * 119.99590 * 353.75666 * 15 13 11 18 18 H 1.48498 * 109.47394 * 84.68378 * 17 15 13 19 19 H 1.48504 * 109.47328 * 204.68470 * 17 15 13 20 20 H 1.48504 * 109.47206 * 324.68379 * 17 15 13 21 21 H 1.09005 * 109.46477 * 302.33239 * 1 2 3 22 22 H 1.08997 * 109.47622 * 62.32848 * 1 2 3 23 23 H 1.08996 * 109.47091 * 182.33472 * 1 2 3 24 24 H 1.08007 * 119.91489 * 0.22459 * 6 5 4 25 25 H 1.07995 * 120.35505 * 180.02562 * 7 6 5 26 26 H 1.07996 * 119.73342 * 179.85116 * 8 7 6 27 27 H 1.07992 * 119.47253 * 179.97438 * 9 8 7 28 28 H 0.96999 * 119.99900 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 16 2.1900 -0.9602 1.4150 5 6 3.5731 -1.6654 0.5560 6 6 4.7101 -2.2975 1.0406 7 6 5.6683 -2.7680 0.1657 8 6 5.4823 -2.6018 -1.1949 9 6 4.3535 -1.9765 -1.6757 10 6 3.3714 -1.4962 -0.8077 11 6 2.0848 -0.8072 -1.1902 12 1 2.2723 -0.1331 -2.0261 13 6 1.0709 -1.8417 -1.6057 14 1 0.7903 -2.6284 -0.9208 15 6 0.5013 -1.7842 -2.8600 16 7 -0.2891 -2.7528 -3.2684 17 14 0.8522 -0.3304 -3.9791 18 1 2.1205 -0.5665 -4.7145 19 1 -0.2608 -0.1728 -4.9497 20 1 0.9756 0.9042 -3.1630 21 1 -0.3632 0.5497 0.8684 22 1 -0.3634 0.4772 -0.9101 23 1 -0.3633 -1.0268 0.0419 24 1 4.8453 -2.4212 2.1051 25 1 6.5537 -3.2606 0.5393 26 1 6.2287 -2.9650 -1.8858 27 1 4.2262 -1.8556 -2.7413 28 1 -0.6894 -2.7124 -4.1510 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260735910.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = 18.985057 kcal Electronic energy + Delta-G solvation = -12723.199838 eV Core-core repulsion = 10636.734008 eV Total energy + Delta-G solvation = -2086.465830 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.72175 -35.38963 -32.08556 -30.44898 -30.22469 -26.91033 -24.29171 -22.25318 -21.36539 -19.47192 -17.33859 -16.90910 -15.06213 -14.81902 -14.30704 -14.16225 -13.55145 -13.07752 -12.84749 -12.60447 -12.04832 -11.85889 -11.51163 -11.18394 -10.94565 -10.60085 -10.35196 -10.08473 -9.94559 -9.63021 -9.22536 -8.93937 -8.70617 -8.07407 -6.64742 -6.24923 -4.23222 1.85058 1.96729 2.39723 3.05324 3.14500 3.23032 3.25014 4.23866 4.29491 5.05543 5.29878 5.43190 5.51167 5.74569 5.81258 5.89695 6.04449 6.21069 6.33221 6.52571 6.59897 6.64940 6.70879 6.91967 6.99501 7.16560 7.22782 7.43270 7.54609 8.31480 8.82533 9.34014 10.86921 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.028081 B = 0.013503 C = 0.010467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.873370 B = 2073.148021 C = 2674.501535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.037 4.037 3 H 0.077 0.923 4 S -0.183 6.183 5 C -0.088 4.088 6 C -0.094 4.094 7 C -0.130 4.130 8 C -0.124 4.124 9 C -0.101 4.101 10 C -0.049 4.049 11 C 0.035 3.965 12 H 0.058 0.942 13 C -0.492 4.492 14 H 0.084 0.916 15 C 0.079 3.921 16 N -0.886 5.886 17 Si 0.867 3.133 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.264 1.264 21 H 0.036 0.964 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.279 4.080 4.140 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.166 4.166 3 H 0.096 0.904 4 S 0.059 5.941 5 C -0.200 4.200 6 C -0.118 4.118 7 C -0.150 4.150 8 C -0.145 4.145 9 C -0.122 4.122 10 C -0.054 4.054 11 C 0.015 3.985 12 H 0.075 0.925 13 C -0.529 4.529 14 H 0.102 0.898 15 C -0.125 4.125 16 N -0.522 5.522 17 Si 0.694 3.306 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.189 1.189 21 H 0.055 0.945 22 H 0.082 0.918 23 H 0.106 0.894 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.600 3.964 5.214 9.299 hybrid contribution 0.652 0.643 -2.005 2.204 sum 7.253 4.607 3.209 9.172 Atomic orbital electron populations 1.21532 0.91308 1.04205 0.99754 1.24238 1.00064 0.98331 0.93977 0.90436 1.85442 1.28658 1.58515 1.21468 1.21974 0.97605 1.04256 0.96166 1.20253 0.92596 0.99832 0.99119 1.20813 0.98973 1.01931 0.93318 1.20817 0.97847 1.00395 0.95416 1.20773 0.93246 0.98781 0.99367 1.21492 0.94594 0.97403 0.91895 1.18825 0.90364 0.95131 0.94143 0.92451 1.20597 1.20157 1.11671 1.00516 0.89836 1.25039 0.94743 0.95563 0.97139 1.69877 1.31434 1.31345 1.19522 0.86997 0.78459 0.84036 0.81071 1.19970 1.21096 1.18893 0.94522 0.91838 0.89441 0.86676 0.86274 0.86639 0.86688 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.51 37.16 0.32 -1.85 15 2 C -0.04 -0.76 3.92 -26.13 -0.10 -0.87 15 3 H 0.08 1.45 8.14 -51.93 -0.42 1.02 15 4 S -0.18 -3.72 22.53 -107.50 -2.42 -6.14 15 5 C -0.09 -1.81 6.48 -39.12 -0.25 -2.07 15 6 C -0.09 -1.67 10.05 -39.44 -0.40 -2.07 15 7 C -0.13 -2.09 10.08 -39.63 -0.40 -2.49 15 8 C -0.12 -2.11 10.00 -39.74 -0.40 -2.50 15 9 C -0.10 -2.03 9.97 -39.27 -0.39 -2.42 15 10 C -0.05 -1.07 5.21 -103.79 -0.54 -1.61 15 11 C 0.04 0.81 2.40 -92.24 -0.22 0.59 15 12 H 0.06 1.31 4.78 -51.93 -0.25 1.06 15 13 C -0.49 -12.94 6.51 -34.44 -0.22 -13.16 15 14 H 0.08 2.48 7.93 -52.48 -0.42 2.06 15 15 C 0.08 2.11 5.47 -17.82 -0.10 2.02 15 16 N -0.89 -25.56 13.96 55.43 0.77 -24.78 15 17 Si 0.87 20.07 26.93 -169.99 -4.58 15.49 15 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 20 H -0.26 -5.79 6.82 56.52 0.39 -5.41 15 21 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.09 1.93 6.79 -51.93 -0.35 1.58 15 24 H 0.12 1.79 8.06 -52.48 -0.42 1.37 15 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.12 1.60 8.06 -52.49 -0.42 1.17 15 27 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 LS Contribution 247.51 15.07 3.73 3.73 Total: -1.00 -28.18 247.51 -8.33 -36.52 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.13 Total: 1.63 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.71 Total: -26.44 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.77 Total: -24.78 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.58 Total: 15.49 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.42 Total: -6.14 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.18 -8.33 -36.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260735910.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.501 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds