Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 111.00095 * 2 1 4 4 S 1.83297 * 111.10480 * 124.16121 * 2 1 3 5 5 C 1.77434 * 96.61256 * 142.78965 * 4 2 1 6 6 C 1.38822 * 130.56954 * 164.76976 * 5 4 2 7 7 C 1.38023 * 120.16242 * 180.24235 * 6 5 4 8 8 C 1.38320 * 119.29223 * 0.02816 * 7 6 5 9 9 C 1.37708 * 120.54397 * 359.87600 * 8 7 6 10 10 C 1.38888 * 108.28237 * 344.80226 * 5 4 2 11 11 C 1.50871 * 115.36873 * 359.27072 * 10 5 4 12 12 H 1.09000 * 109.27647 * 140.89233 * 11 10 5 13 13 C 1.50697 * 109.28062 * 260.32898 * 11 10 5 14 14 H 1.08010 * 119.99606 * 57.69503 * 13 11 10 15 15 C 1.37874 * 120.00662 * 237.69354 * 13 11 10 16 16 N 1.31513 * 120.00326 * 173.76051 * 15 13 11 17 17 Si 1.86798 * 119.99590 * 353.75666 * 15 13 11 18 18 H 1.48498 * 109.47394 * 84.68378 * 17 15 13 19 19 H 1.48504 * 109.47328 * 204.68470 * 17 15 13 20 20 H 1.48504 * 109.47206 * 324.68379 * 17 15 13 21 21 H 1.09005 * 109.46477 * 302.33239 * 1 2 3 22 22 H 1.08997 * 109.47622 * 62.32848 * 1 2 3 23 23 H 1.08996 * 109.47091 * 182.33472 * 1 2 3 24 24 H 1.08007 * 119.91489 * 0.22459 * 6 5 4 25 25 H 1.07995 * 120.35505 * 180.02562 * 7 6 5 26 26 H 1.07996 * 119.73342 * 179.85116 * 8 7 6 27 27 H 1.07992 * 119.47253 * 179.97438 * 9 8 7 28 28 H 0.96999 * 119.99900 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 16 2.1900 -0.9602 1.4150 5 6 3.5731 -1.6654 0.5560 6 6 4.7101 -2.2975 1.0406 7 6 5.6683 -2.7680 0.1657 8 6 5.4823 -2.6018 -1.1949 9 6 4.3535 -1.9765 -1.6757 10 6 3.3714 -1.4962 -0.8077 11 6 2.0848 -0.8072 -1.1902 12 1 2.2723 -0.1331 -2.0261 13 6 1.0709 -1.8417 -1.6057 14 1 0.7903 -2.6284 -0.9208 15 6 0.5013 -1.7842 -2.8600 16 7 -0.2891 -2.7528 -3.2684 17 14 0.8522 -0.3304 -3.9791 18 1 2.1205 -0.5665 -4.7145 19 1 -0.2608 -0.1728 -4.9497 20 1 0.9756 0.9042 -3.1630 21 1 -0.3632 0.5497 0.8684 22 1 -0.3634 0.4772 -0.9101 23 1 -0.3633 -1.0268 0.0419 24 1 4.8453 -2.4212 2.1051 25 1 6.5537 -3.2606 0.5393 26 1 6.2287 -2.9650 -1.8858 27 1 4.2262 -1.8556 -2.7413 28 1 -0.6894 -2.7124 -4.1510 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260735910.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = 3.820774 kcal Electronic energy + Delta-G solvation = -12723.857410 eV Core-core repulsion = 10636.734008 eV Total energy + Delta-G solvation = -2087.123402 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 220.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21282 -37.06101 -34.07971 -31.95695 -31.65978 -28.71152 -26.04614 -23.76717 -22.86042 -21.17256 -19.28499 -18.41058 -16.70597 -16.39253 -15.97340 -15.71930 -15.18174 -14.74351 -14.55109 -14.18446 -13.74280 -13.32018 -13.12230 -12.85866 -12.64943 -12.24198 -11.97547 -11.86373 -11.58483 -11.47167 -10.86867 -10.78039 -10.43060 -9.57167 -8.32362 -8.20800 -6.34043 0.39686 0.51629 0.83828 1.30917 1.33614 1.41282 1.48307 2.29482 2.82050 3.07665 3.75390 4.04404 4.14030 4.19067 4.26045 4.49286 4.56382 4.73381 4.73903 4.95961 5.02328 5.06847 5.18444 5.42899 5.48928 5.56646 5.60989 5.69889 6.10918 6.24487 6.67595 7.26413 8.84348 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.028081 B = 0.013503 C = 0.010467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.873370 B = 2073.148021 C = 2674.501535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.039 4.039 3 H 0.102 0.898 4 S -0.191 6.191 5 C -0.108 4.108 6 C -0.099 4.099 7 C -0.114 4.114 8 C -0.118 4.118 9 C -0.122 4.122 10 C -0.087 4.087 11 C 0.033 3.967 12 H 0.058 0.942 13 C -0.480 4.480 14 H 0.033 0.967 15 C 0.026 3.974 16 N -0.939 5.939 17 Si 0.926 3.074 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.242 1.242 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.139 0.861 25 H 0.165 0.835 26 H 0.152 0.848 27 H 0.111 0.889 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.746 5.066 4.584 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.168 4.168 3 H 0.120 0.880 4 S 0.051 5.949 5 C -0.220 4.220 6 C -0.123 4.123 7 C -0.133 4.133 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.092 4.092 11 C 0.014 3.986 12 H 0.076 0.924 13 C -0.518 4.518 14 H 0.051 0.949 15 C -0.172 4.172 16 N -0.578 5.578 17 Si 0.750 3.250 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.166 1.166 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.157 0.843 25 H 0.183 0.817 26 H 0.170 0.830 27 H 0.129 0.871 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.087 4.963 5.677 11.808 hybrid contribution -0.002 0.223 -2.033 2.045 sum 9.085 5.186 3.645 11.077 Atomic orbital electron populations 1.21440 0.91135 1.02522 1.01136 1.24238 1.00273 0.99175 0.93078 0.87955 1.85323 1.29351 1.58941 1.21262 1.22238 0.98535 1.05548 0.95692 1.20699 0.91845 0.98862 1.00890 1.21364 0.99507 0.99864 0.92586 1.21258 0.97161 0.98642 0.96772 1.21003 0.94316 0.99773 0.99158 1.21471 0.95170 0.99424 0.93124 1.18801 0.90265 0.94404 0.95179 0.92433 1.20525 1.20874 1.10914 0.99463 0.94882 1.25784 0.94577 0.98163 0.98715 1.70024 1.33639 1.33869 1.20253 0.86034 0.78335 0.81381 0.79202 1.19208 1.21140 1.16564 0.91513 0.91898 0.92775 0.84317 0.81703 0.83020 0.87109 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.09 8.51 71.98 0.61 -3.48 15 2 C -0.04 -1.57 3.92 30.98 0.12 -1.45 15 3 H 0.10 3.62 8.14 -2.38 -0.02 3.60 15 4 S -0.19 -7.66 22.53 -56.49 -1.27 -8.93 15 5 C -0.11 -4.35 6.48 22.57 0.15 -4.20 15 6 C -0.10 -3.24 10.05 22.36 0.22 -3.02 15 7 C -0.11 -3.14 10.08 22.24 0.22 -2.92 15 8 C -0.12 -3.59 10.00 22.16 0.22 -3.36 15 9 C -0.12 -4.74 9.97 22.47 0.22 -4.51 15 10 C -0.09 -3.77 5.21 -19.33 -0.10 -3.87 15 11 C 0.03 1.53 2.40 -11.84 -0.03 1.50 15 12 H 0.06 2.58 4.78 -2.39 -0.01 2.57 15 13 C -0.48 -26.15 6.51 25.60 0.17 -25.99 15 14 H 0.03 2.09 7.93 -2.91 -0.02 2.06 15 15 C 0.03 1.44 5.47 84.65 0.46 1.90 15 16 N -0.94 -56.43 13.96 21.45 0.30 -56.13 15 17 Si 0.93 41.53 26.93 68.60 1.85 43.37 15 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 15 20 H -0.24 -9.88 6.82 99.48 0.68 -9.21 15 21 H 0.07 2.18 8.14 -2.38 -0.02 2.16 15 22 H 0.06 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.05 2.48 6.79 -2.39 -0.02 2.46 15 24 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 25 H 0.17 3.09 8.06 -2.91 -0.02 3.06 15 26 H 0.15 3.46 8.06 -2.91 -0.02 3.44 15 27 H 0.11 4.25 8.06 -2.91 -0.02 4.22 15 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 Total: -1.00 -63.33 247.51 4.27 -59.07 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.12 Total: 12.03 kcal Atomic # 6 Polarization: -51.68 SS G_CDS: 2.28 Total: -49.40 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.30 Total: -56.13 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.85 Total: 43.37 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.27 Total: -8.93 kcal Total: -63.33 4.27 -59.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260735910.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.886 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds